Enhancement of the Seed-Target Recognition Step in RNA Silencing by a PIWI/MID Domain Protein (Q27653626)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19187762%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

title

Enhancement of the seed-target recognition step in RNA silencing by a PIWI/MID domain protein (English)

1 reference

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20 January 2020

0 references

Eneida Abreu Parizotto

2

1 reference

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20 January 2020

author name string

James S Parker

1

1 reference

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20 January 2020

Muhan Wang

3

1 reference

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20 January 2020

S Mark Roe

4

1 reference

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20 January 2020

David Barford

5

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20 January 2020

publication date

1 January 2009

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20 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19187762%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

volume

33

1 reference

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20 January 2020

issue

2

1 reference

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20 January 2020

page(s)

204-214

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19187762%20AND%20SRC:MED&resulttype=core&format=json

Structure of the guide-strand-containing argonaute silencing complex

20 January 2020

cites work

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20 March 2017

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RNA-binding protein Dnd1 inhibits microRNA access to target mRNA

20 March 2017

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

20 March 2017

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20 March 2017

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Principles of microRNA-target recognition

20 March 2017

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The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR

20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution

20 March 2017

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20 March 2017

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Widespread changes in protein synthesis induced by microRNAs

20 March 2017

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Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

7 April 2017

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The integration of macromolecular diffraction data

20 March 2017

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

20 March 2017

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

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20 March 2017

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The CCP4 suite: programs for protein crystallography

20 March 2017

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Prediction of mammalian microRNA targets

20 March 2017

1 reference

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The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

20 March 2017

1 reference

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Isothermal titration calorimetry of protein-protein interactions

20 March 2017

1 reference

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Biogenesis and germline functions of piRNAs

20 March 2017

1 reference

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Strategies for silencing human disease using RNA interference

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

20 March 2017

1 reference

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Specificity of microRNA target selection in translational repression

20 March 2017

1 reference

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The role of site accessibility in microRNA target recognition

20 March 2017

1 reference

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

7 April 2017

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Rapid measurement of binding constants and heats of binding using a new titration calorimeter

7 April 2017

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Small non-coding RNAs in animal development

7 April 2017

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Argonaute proteins: key players in RNA silencing

7 April 2017

1 reference

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The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race

7 April 2017

1 reference

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

7 April 2017

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Crystal structure of Argonaute and its implications for RISC slicer activity

7 April 2017

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Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

7 April 2017

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Argonaute2, a link between genetic and biochemical analyses of RNAi

7 April 2017

1 reference

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Improved free-energy parameters for predictions of RNA duplex stability

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Illuminating the silence: understanding the structure and function of small RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Argonautes confront new small RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Molecular basis for target RNA recognition and cleavage by human RISC.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Argonaute proteins: mediators of RNA silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Distance constraints between microRNA target sites dictate efficacy and cooperativity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Argonaute: A scaffold for the function of short regulatory RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

3' UTR seed matches, but not overall identity, are associated with RNAi off-targets

29 September 2017

1 reference

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Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage

29 September 2017

1 reference

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Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein

29 September 2017

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Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity

29 September 2017

1 reference

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LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

29 September 2017

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Kinetic analysis of the RNAi enzyme complex

29 September 2017

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Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity

29 September 2017

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Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex

2 June 2018

1 reference

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Potent effect of target structure on microRNA function.

2 June 2018

1 reference

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Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2642989

Target accessibility dictates the potency of human RISC

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19187762

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19187762

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2008.12.012

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19187762%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19187762%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

19187762

2 references