Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis , (Q27658038)

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Language	Label	Description	Also known as
English	Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis ,	scientific article

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scholarly article

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Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis , (English)

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3-deoxy-D-threo-hex-2-ulosarate(2-)

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ChEBI release 2020-05-28

Oceanobacillus iheyensis

object named as

Oceanobacillus iheyensis

1 reference

based on heuristic

inferred from title

11

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6

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Matthew P. Jacobson

12

object named as

Matthew P Jacobson

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Jeffrey B Bonanno

7

object named as

Jeffrey Bonanno

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13

object named as

John A Gerlt

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author name string

John F Rakus

1

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Chakrapani Kalyanaraman

2

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Alexander A Fedorov

3

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Elena V Fedorov

4

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Fiona P Mills-Groninger

5

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Kevin Bain

8

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J Michael Sauder

9

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Stephen K Burley

10

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language of work or name

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publication date

8 December 2009

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48

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48

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11546-58

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Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening

1 reference

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20 March 2017

Evolution of Enzymatic Activities in the Enolase Superfamily: l -Rhamnonate Dehydratase † ‡

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Evolution of enzymatic activities in the enolase superfamily: D-Mannonate dehydratase from Novosphingobium aromaticivorans

1 reference

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20 March 2017

Evolution of enzymatic activities in the enolase superfamily: L-talarate/galactarate dehydratase from Salmonella typhimurium LT2

1 reference

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Prediction and assignment of function for a divergent N-succinyl amino acid racemase

1 reference

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20 March 2017

Structure-based activity prediction for an enzyme of unknown function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Evolution of enzymatic activities in the enolase superfamily: identification of the general acid catalyst in the active site of D-glucarate dehydratase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

A carboxylate oxygen of the substrate bridges the magnesium ions at the active site of enolase: structure of the yeast enzyme complexed with the equilibrium mixture of 2-phosphoglycerate and phosphoenolpyruvate at 1.8 A resolution

1 reference

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20 March 2017

BALBES: a molecular-replacement pipeline

1 reference

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20 March 2017

The CCP4 suite: programs for protein crystallography

1 reference

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20 March 2017

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Maximum-likelihood density modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Automated MAD and MIR structure solution

1 reference

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20 March 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Evolution of enzymatic activities in the enolase superfamily: D-tartrate dehydratase from Bradyrhizobium japonicum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Evolution of enzymatic activities in the enolase superfamily: L-fuconate dehydratase from Xanthomonas campestris

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

20 March 2017

Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening

1 reference

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7 April 2017

Diffraction methods for biological macromolecules. Interactive computer graphics: FRODO

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7 April 2017

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

29 September 2017

The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation

1 reference

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Virtual screening against highly charged active sites: identifying substrates of alpha-beta barrel enzymes

1 reference

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29 September 2017

Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity

1 reference

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29 September 2017

LIGAND: database of chemical compounds and reactions in biological pathways

1 reference

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29 September 2017

Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787699

29 September 2017

Automated refinement for protein crystallography

1 reference

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Identification of the Missing Links in Prokaryotic Pentose Oxidation Pathways

1 reference

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The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids

1 reference

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The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1021/BI901731C

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