Key aspects of analyzing microarray gene-expression data (Q28299740)

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

Europe PubMed Central

title

Key aspects of analyzing microarray gene-expression data (English)

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James J Chen

1

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language of work or name

English

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publication date

May 2007

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published in

Pharmacogenomics

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volume

8

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issue

5

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page(s)

473-82

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cites work

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Analysis of variance components in gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Analysis of variance for gene expression microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

INCREASING THE IMPACT OF BIOINFORMATICS

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

A generalized additive model for microarray gene expression data analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Empirical evaluation of data transformations and ranking statistics for microarray analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

A random variance model for detection of differential gene expression in small microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Improved statistical tests for differential gene expression by shrinking variance components estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Assessing gene significance from cDNA microarray expression data via mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Estimation of false discovery rates in multiple testing: application to gene microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Multiple-testing strategy for analyzing cDNA array data on gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Multi-class clustering and prediction in the analysis of microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Support vector machine classification and validation of cancer tissue samples using microarray expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Classification methods for the development of genomic signatures from high-dimensional data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Selection bias in gene extraction on the basis of microarray gene-expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Global functional profiling of gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Discovering statistically significant pathways in expression profiling studies

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Gene selection with multiple ordering criteria

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Roadmap for developing and validating therapeutically relevant genomic classifiers

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Cancer biomarkers: an emerging means of detecting, diagnosing and treating cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Testing for differentially expressed genes with microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Comparison of methods for estimating the number of true null hypotheses in multiplicity testing.

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Gene Selection for Cancer Classification using Support Vector Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

A direct approach to false discovery rates

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473

Empirical Bayes Analysis of a Microarray Experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.2217%2F14622416.8.5.473