Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy (Q28535025)

5

object named as

Susan E Celniker

0 references

Saurabh Sinha

8

object named as

Saurabh Sinha

0 references

author name string

Qiong Cheng

1

0 references

Hannah Pham

3

0 references

Charles Blatti

4

0 references

Scot A Wolfe

6

0 references

Michael H Brodsky

Creative Commons Attribution 4.0 International

7

0 references

language of work or name

English

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publication date

2013

0 references

published in

PLOS Genetics

0 references

volume

9

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issue

8

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page(s)

e1003571

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copyright license

start time

1 August 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

29 September 2017

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29 September 2017

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Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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On schemes of combinatorial transcription logic

29 September 2017

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GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter

29 September 2017

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Interplay of signal mediators of decapentaplegic (Dpp): molecular characterization of mothers against dpp, Medea, and daughters against dpp.

29 September 2017

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Specificity, free energy and information content in protein-DNA interactions

29 September 2017

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Chromatin remodeling mediated by Drosophila GAGA factor and ISWI activates fushi tarazu gene transcription in vitro

29 September 2017

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Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins

29 September 2017

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Chromatin. Ga-ga over GAGA factor

29 September 2017

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Nucleosome core displacement in vitro via a metastable transcription factor-nucleosome complex

29 September 2017

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A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

29 September 2017

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20 June 2018

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HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature

20 June 2018

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The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo

20 June 2018

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Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins

20 June 2018

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Structural constraints in collaborative competition of transcription factors against the nucleosome

20 June 2018

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The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes.

20 June 2018

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Nucleosome disruption by transcription factor binding in yeast.

20 June 2018

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Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003571

Predicting transcription factor affinities to DNA from a biophysical model

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003571

Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003571

The Drosophila retained/dead ringer gene and ARID gene family function during development.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731213

The Drosophila SOX-domain protein Dichaete is required for the development of the central nervous system midline.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731213

Medea is a Drosophila Smad4 homolog that is differentially required to potentiate DPP responses.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3731213

MITOMI: A Microfluidic Platform for In Vitro Characterization of Transcription Factor–DNA Interaction

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23935523

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flexible interaction of Drosophila Smad complexes with bipartite binding sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23935523

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003571

1 reference

1 reference

1 reference

PubMed publication ID

23935523

1 reference