Evaluating evolutionary history in the face of high gene tree discordance in Australian Gehyra (Reptilia: Gekkonidae) (Q28601553)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

title

Evaluating evolutionary history in the face of high gene tree discordance in Australian Gehyra (Reptilia: Gekkonidae) (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

0 references

0 references

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

Steve Donnellan

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

author name string

M Sistrom

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

M Hutchinson

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

language of work or name

English

0 references

publication date

19 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

volume

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

page(s)

52-63

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

Phylogeny estimation of the radiation of western North American chipmunks (Tamias) in the face of introgression using reproductive protein genes

11 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Coming to America: multiple origins of New World geckos

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

jModelTest: phylogenetic model averaging

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

BEAST: Bayesian evolutionary analysis by sampling trees

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Evaluating molecular clock calibrations using Bayesian analyses with soft and hard bounds

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

MrBayes 3: Bayesian phylogenetic inference under mixed models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

A New Statistical Method for Haplotype Reconstruction from Population Data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Bayesian inference of species trees from multilocus data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Gene tree discordance, phylogenetic inference and the multispecies coalescent

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Is a new and general theory of molecular systematics emerging?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

High-resolution species trees without concatenation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Inferring phylogeny despite incomplete lineage sorting

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Delimiting species without monophyletic gene trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Delimiting species in recent radiations with low levels of morphological divergence: a case study in Australian Gehyra geckos.

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Anonymous nuclear loci in non-model organisms: making the most of high-throughput genome surveys

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Is recombination a problem for species-tree analyses?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Ancient drainages divide cryptic species in Australia's arid zone: morphological and multi-gene evidence for four new species of Beaked Geckos (Rhynchoedura).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Recent and rapid speciation with limited morphological disparity in the genus Rattus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Sources of Error Inherent in Species-Tree Estimation: Impact of Mutational and Coalescent Effects on Accuracy and Implications for Choosing among Different Methods

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Diversification and persistence at the arid-monsoonal interface: australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Rapid change in drift of the Australian plate records collision with Ontong Java plateau

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Inconsistency of phylogenetic estimates from concatenated data under coalescence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

The impact of gene-tree/species-tree discordance on diversification-rate estimation.

29 September 2017

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

CRANN: detecting adaptive evolution in protein-coding DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Out of the blue: a novel, trans-Atlantic clade of geckos (Gekkota, Squamata)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Phylogenetic relationships among gekkotan lizards inferred from C-mos nuclear DNA sequences and a new classification of the Gekkota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Estimating species trees from unrooted gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Cenozoic climatic change and the development of the arid vegetation in Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

New primers for the amplification and sequencing of nuclear loci in a taxonomically wide set of reptiles and amphibians

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

phytools: an R package for phylogenetic comparative biology (and other things)

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

DNA sequence polymorphism analysis using DnaSP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Molecular phylogeny and divergence dates for Australasian elapids and sea snakes (hydrophiinae): evidence from seven genes for rapid evolutionary radiations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Morphological differentiation correlates with ecological but not with genetic divergence in a Gehyra gecko.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4815653

Karyotypic Evolution in Gehyra (Gekkonidae: Reptilia) I. The Gehyra Variegata-Punctata Complex.

27 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Karyotypic Evolution in Gehyra (Gekkonidae: Reptilia) II.* A New Species from the Alligator Rivers Region in Northern Australia

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Use of Ranks in One-Criterion Variance Analysis

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Gene Trees in Species Trees

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Molecular evidence for Gondwanan origins of multiple lineages within a diverse Australasian gecko radiation

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

On the status and relationships of the gecko species Gehyra barea Kopstein 1926, with description of new specimens and a range extension

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Molecular phylogeny of Australian Gehyra (Squamata: Gekkonidae) and taxonomic revision of Gehyra variegata in south-eastern Australia

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2014.6

7 January 2021

Identifiers

DOI

10.1038/HDY.2014.6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

11 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json

11 March 2020

PubMed publication ID

24642886

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24642886%20AND%20SRC:MED&resulttype=core&format=json