Extension of the GLYCAM06 Biomolecular Force Field to Lipids, Lipid Bilayers and Glycolipids (Q30411802)

19 September 2017

Extension of the GLYCAM06 Biomolecular Force Field to Lipids, Lipid Bilayers and Glycolipids (English)

1 reference

19 September 2017

0 references

1 reference

Matthew B Tessier

1

1 reference

19 September 2017

Mari L Demarco

series ordinal

2

1 reference

19 September 2017

Austin B Yongye

series ordinal

3

1 reference

19 September 2017

Robert J Woods

series ordinal

4

1 reference

19 September 2017

1 January 2008

1 reference

19 September 2017

1 reference

19 September 2017

34

1 reference

19 September 2017

4

1 reference

19 September 2017

349-363

1 reference

Restrained electrostatic potential atomic partial charges for condensed-phase simulations of carbohydrates

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Solvated ensemble averaging in the calculation of partial atomic charges

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

GLYCAM06: a generalizable biomolecular force field. Carbohydrates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Brominated lipids identify lipid binding sites on the surface of the reaction center from Rhodobacter sphaeroides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Quantum mechanical study of the nonbonded forces in water-methanol complexes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure of PITPbeta in complex with phosphatidylcholine: comparison of structure and lipid transfer to other PITP isoforms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

The Amber biomolecular simulation programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

UCSF Chimera--a visualization system for exploratory research and analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Molecular orientation and conformation of phosphatidylinositides in membrane mimetics using variable angle sample spinning (VASS) NMR.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

The state of lipid rafts: from model membranes to cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure, organization, and function of glycosphingolipids in membrane

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure of human CD1b with bound ligands at 2.3 A, a maze for alkyl chains

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure of human phosphatidylcholine transfer protein in complex with its ligand

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

The Cambridge Structural Database: a quarter of a million crystal structures and rising

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

14 July 2018

https://api.crossref.org/works/10.1080%2F08927020701710890

Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Solvent interactions determine carbohydrate conformation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure of a multifunctional protein. Mammalian phosphatidylinositol transfer protein complexed with phosphatidylcholine

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Structure of lipid bilayers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Simulation studies of the interaction of antimicrobial peptides and lipid bilayers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Characterization of protein-glycolipid recognition at the membrane bilayer.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

VMD: visual molecular dynamics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Torsion angle analysis of glycolipid order at membrane surfaces

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Membrane lipid composition and cellular function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Crystal structure of cobra-venom phospholipase A2 in a complex with a transition-state analogue

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3256582

Molecular dynamics simulations of the influenza hemagglutinin fusion peptide in micelles and bilayers: conformational analysis of peptide and lipids

14 July 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Molecular dynamics study of aquaporin-1 water channel in a lipid bilayer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

New software for searching the Cambridge Structural Database and visualizing crystal structures

21 January 2018

2 references

https://api.crossref.org/works/10.1080%2F08927020701710890

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/22247593

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Determining atom-centered monopoles from molecular electrostatic potentials. The need for high sampling density in formamide conformational analysis

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Polyunsaturated fatty acids in lipid bilayers: intrinsic and environmental contributions to their unique physical properties.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

An all atom force field for simulations of proteins and nucleic acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Diffusing and colliding: the atomic level folding/unfolding pathway of a small helical protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Climatic impact of tropical lowland deforestation on nearby montane cloud forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

Molecular dynamics simulation of a bilayer of 200 lipids in the gel and in the liquid crystal phase

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F08927020701710890

10.1080/08927020701710890

21 January 2018

Identifiers

DOI

1 reference

release_t6ipe3bc3vautgh3noyrp53x5i

19 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/t6ipe3bc3vautgh3noyrp53x5i

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

19 September 2017

PubMed publication ID

22247593

1 reference