PROTEOME-3D: an interactive bioinformatics tool for large-scale data exploration and knowledge discovery (Q30823722)

3 October 2017

PROTEOME-3D: an interactive bioinformatics tool for large-scale data exploration and knowledge discovery (English)

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3 October 2017

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Jimmy Eng

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3 October 2017

Deborah H Lundgren

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3 October 2017

Michael E Wright

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3

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3 October 2017

David K Han

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4

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3 October 2017

7 September 2003

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Molecular & Cellular Proteomics

3 October 2017

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3 October 2017

2

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3 October 2017

11

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3 October 2017

1164-1176

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

3 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

From biological databases to platforms for biomedical discovery.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Integrating biological databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

GoMiner: a resource for biological interpretation of genomic and proteomic data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Annexin I Is an Endogenous Ligand that Mediates Apoptotic Cell Engulfment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

The Molecule Pages database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Overview of the Alliance for Cellular Signaling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Protein microarrays and proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Deletion of chromosomal region 6q14-16 in prostate cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Endogenous lipid- and peptide-derived anti-inflammatory pathways generated with glucocorticoid and aspirin treatment activate the lipoxin A4 receptor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Functional proteomics: The goalposts are moving

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

CHC1-L, a candidate gene for prostate carcinogenesis at 13q14.2, is frequently affected by loss of heterozygosity and underexpressed in human prostate cancer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

The post-genomic era of interactive proteomics: facts and perspectives

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Describing biological protein interactions in terms of protein states and state transitions: the LiveDIP database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Mass spectrometry in proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Arrays for protein expression profiling: towards a viable alternative to two-dimensional gel electrophoresis?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Phagocyte receptors for apoptotic cells: recognition, uptake, and consequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Pathway databases: a case study in computational symbolic theories

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Experimental annotation of the human genome using microarray technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

BIND--The Biomolecular Interaction Network Database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

A novel ligand of the formyl peptide receptor: annexin I regulates neutrophil extravasation by interacting with the FPR

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

BioJAKE: a tool for the creation, visualization and manipulation of metabolic pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Molecular biology of progression of prostate cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Chromosomal clues to the development of prostate tumors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Metastatic sublines of an SV40 large T antigen immortalized human prostate epithelial cell line

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Review of allelic loss and gain in prostate cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1487189

Proteomics and its trends facing nature's complexity.

21 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Creating the gene ontology resource: design and implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Gain in chromosome 8q correlates with early progression in hormonal treated prostate cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Profiling Gene Expression Using Onto-Express

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Constellations in a cellular universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Bioinformatics. The human genome in 3D, at your fingertips

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Loss of the short arm of the Y chromosome in human prostate carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Detection of genetic alterations in advanced prostate cancer by comparative genomic hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Genomewide DNA hypomethylation is associated with alterations on chromosome 8 in prostate carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Chromosomal changes in incidental prostatic carcinomas detected by comparative genomic hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

Clinical significance of alterations of chromosome 8 detected by fluorescence in situ hybridization analysis in pathologic organ-confined prostate cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M300059-MCP200

10.1074/MCP.M300059-MCP200

21 January 2018

Identifiers

DOI

1 reference

3 October 2017

1 reference

3 October 2017

PubMed publication ID

12960178

1 reference