Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers (Q33401099)

26 July 2017

title

Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers (English)

1 reference

26 July 2017

1 reference

1

John R Finnerty

1 reference

26 July 2017

Maureen E Mazza

2

1 reference

26 July 2017

Peter A Jezewski

series ordinal

3

1 reference

26 July 2017

publication date

20 January 2009

1 reference

26 July 2017

published in

BMC Evolutionary Biology

1 reference

26 July 2017

volume

9

1 reference

26 July 2017

page(s)

18

1 reference

The zebrafish genome: a review and msx gene case study

26 July 2017

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Conservation and phylogeny of a novel family of non-Hox genes of the Antp class in Demospongiae (porifera).

21 June 2018

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PIAS1 confers DNA-binding specificity on the Msx1 homeoprotein

21 June 2018

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Msx1 and Msx2 have shared essential functions in neural crest but may be dispensable in epidermis and axis formation in Xenopus.

21 June 2018

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Novel MSX1 frameshift causes autosomal-dominant oligodontia

21 June 2018

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Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

21 June 2018

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The EH1 motif in metazoan transcription factors

21 June 2018

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Two rounds of whole genome duplication in the ancestral vertebrate

21 June 2018

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21 June 2018

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Evolution at two levels: on genes and form

21 June 2018

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Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity

21 June 2018

1 reference

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Phenotype-genotype correlation in Hirschsprung disease is illuminated by comparative analysis of the RET protein sequence

21 June 2018

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The origin of subfunctions and modular gene regulation.

21 June 2018

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Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

21 June 2018

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21 June 2018

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In a Vietnamese population, MSX1 variants contribute to cleft lip and palate

21 June 2018

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Evolutionary conservation and selection of human disease gene orthologs in the rat and mouse genomes

21 June 2018

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MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis

21 June 2018

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Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates

21 June 2018

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The early stages of duplicate gene evolution.

21 June 2018

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Widespread purifying selection at polymorphic sites in human protein-coding loci

21 June 2018

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Structure of HoxA9 and Pbx1 bound to DNA: Hox hexapeptide and DNA recognition anterior to posterior

21 June 2018

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Emerging systems: between vertebrates and arthropods, the Lophotrochozoa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Complete sequencing shows a role for MSX1 in non-syndromic cleft lip and palate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

High-dose vitamin therapy stimulates variant enzymes with decreased coenzyme binding affinity (increased K(m)): relevance to genetic disease and polymorphisms

21 June 2018

1 reference

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Crystal structure of the Msx-1 homeodomain/DNA complex

21 June 2018

1 reference

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Beyond the Hox: how widespread is homeobox gene clustering?

21 June 2018

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Msx homeobox genes inhibit differentiation through upregulation of cyclin D1.

21 June 2018

1 reference

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A nonsense mutation in MSX1 causes Witkop syndrome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

21 June 2018

MetaHox gene clusters

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Evidence for 14 homeobox gene clusters in human genome ancestry

21 June 2018

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Msx2 deficiency in mice causes pleiotropic defects in bone growth and ectodermal organ formation

21 June 2018

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Functional haploinsufficiency of the human homeobox gene MSX2 causes defects in skull ossification

21 June 2018

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MSX1 mutation is associated with orofacial clefting and tooth agenesis in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Msx1 antagonizes the myogenic activity of Pax3 in migrating limb muscle precursors.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Comparison of early nerve cord development in insects and vertebrates.

21 June 2018

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Preservation of duplicate genes by complementary, degenerative mutations

21 June 2018

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Molecular evolution of the brain of chordates

21 June 2018

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Haploinsufficiency of MSX1: a mechanism for selective tooth agenesis

21 June 2018

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Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution

21 June 2018

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Protein complex formation between Msx1 and Lhx2 homeoproteins is incompatible with DNA binding activity

21 June 2018

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The human homeobox genes MSX-1, MSX-2, and MOX-1 are differentially expressed in the dermis and epidermis in fetal and adult skin

21 June 2018

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Homeoboxes in sea anemones (Cnidaria:Anthozoa): a PCR-based survey of Nematostella vectensis and Metridium senile

21 June 2018

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Meta-MEME: motif-based hidden Markov models of protein families

21 June 2018

1 reference

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The role of the msh homeobox gene during Drosophila neurogenesis: implication for the dorsoventral specification of the neuroectoderm

21 June 2018

1 reference

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Disruption of Msx-1 and Msx-2 reveals roles for these genes in craniofacial, eye, and axial development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Heterodimerization of Msx and Dlx homeoproteins results in functional antagonism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Alterations in Msx 1 and Msx 2 expression correlate with inhibition of outgrowth of chick facial primordia induced by retinoic acid.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

A conserved region of engrailed, shared among all en-, gsc-, Nk1-, Nk2- and msh-class homeoproteins, mediates active transcriptional repression in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

msh may play a conserved role in dorsoventral patterning of the neuroectoderm and mesoderm

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Comparison of MSX-1 and MSX-2 suggests a molecular basis for functional redundancy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

A role for the Msx-1 homeodomain in transcriptional regulation: residues in the N-terminal arm mediate TATA binding protein interaction and transcriptional repression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Engrailed and Hox homeodomain proteins contain a related Pbx interaction motif that recognizes a common structure present in Pbx.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

A human MSX1 homeodomain missense mutation causes selective tooth agenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

A mutation in the homeodomain of the human MSX2 gene in a family affected with autosomal dominant craniosynostosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Homeobox-containing genes in the most primitive metazoa, the sponges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Epithelial-mesenchymal signaling during tooth development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

The rapid generation of mutation data matrices from protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

HOM/HOX homeobox genes are present in hydra (Chlorohydra viridissima) and are differentially expressed during regeneration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Cloning and sequence comparison of the mouse, human, and chicken engrailed genes reveal potential functional domains and regulatory regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Developmental expression of homeobox genes in the ctenophore Mnemiopsis leidyi

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Identification of a novel missense mutation of MSX1 gene in Chinese family with autosomal-dominant oligodontia.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Complementary striped expression patterns of NK homeobox genes during segment formation in the annelid Platynereis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Conservation and diversification of Msx protein in metazoan evolution.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

The NK homeobox gene cluster predates the origin of Hox genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Palaeontology: modern look for ancient lamprey

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

The homeobox gene Msx in development and transdifferentiation of jellyfish striated muscle.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Pleiotropic functions of a conserved insect-specific Hox peptide motif.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Combined deficiencies of Msx1 and Msx2 cause impaired patterning and survival of the cranial neural crest

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

The "fish-specific" Hox cluster duplication is coincident with the origin of teleosts.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Statistical evidence for a more than 800-million-year-old evolutionarily conserved genomic region in our genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Neuronal evolution: analysis of regulatory genes in a first-evolved nervous system, the hydra nervous system.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Msx2 and Twist cooperatively control the development of the neural crest-derived skeletogenic mesenchyme of the murine skull vault.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Parietal foramina with cleidocranial dysplasia is caused by mutation in MSX2

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Differential regulation of msx genes in the development of the gonopodium, an intromittent organ, and of the "sword," a sexually selected trait of swordtail fishes (Xiphophorus).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Systematic phylogenomic evidence of en bloc duplication of the ancestral 8p11.21-8p21.3-like region

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Comparative study of expression of homeobox gene Msx-1, Msx-2 mRNA during the hard tissue formation of mouse tooth development

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Homeobox gene clusters and the human paralogy map.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Disruption of primary mesenchyme cell patterning by misregulated ectodermal expression of SpMsx in sea urchin embryos.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Relationships among msx gene structure and function in zebrafish and other vertebrates.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Insertional mutation of the mouse Msx1 homeobox gene by an nlacZ reporter gene.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2655272

Genetic polymorphisms in methylenetetrahydrofolate reductase and methionine synthase, folate levels in red blood cells, and risk of neural tube defects

31 October 2018

1 reference

12 December 2020

Identifying HOX paralog groups by the PBX-binding region

1 reference

12 December 2020

MSX1 gene is deleted in Wolf-Hirschhorn syndrome patients with oligodontia

1 reference

12 December 2020

A novelMSX1 mutation in hypodontia

1 reference

12 December 2020

Dissociation of expression patterns of homeodomain transcription factors in the evolution of developmental mode in the sea urchins Heliocidaris tuberculata and H. erythrogramma

1 reference

12 December 2020

MSX1 mutations contribute to nonsyndromic cleft lip in a Thai population

1 reference

12 December 2020

A novel missense mutation in MSX1 underlies autosomal recessive oligodontia with associated dental anomalies in Pakistani families

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-9-18

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-18

9 September 2019

1 reference

26 July 2017

1 reference