Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins. (Q33733600)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20133730%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins (English)

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17 January 2020

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1

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17 January 2020

author name string

Hue Sun Chan

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20133730%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

language of work or name

English

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publication date

29 January 2010

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20133730%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

17 January 2020

published in

1 reference

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17 January 2020

volume

107

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17 January 2020

issue

7

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17 January 2020

page(s)

2920-2925

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Confinement effects on the kinetics and thermodynamics of protein dimerization

17 January 2020

cites work

1 reference

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Native topology of the designed protein Top7 is not conducive to cooperative folding.

28 July 2018

1 reference

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Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues

28 July 2018

1 reference

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Simulation of Top7-CFr: a transient helix extension guides folding.

28 July 2018

1 reference

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Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding

28 July 2018

1 reference

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Origins of barriers and barrierless folding in BBL.

28 July 2018

1 reference

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Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions

28 July 2018

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Mechanical control of the directional stepping dynamics of the kinesin motor

28 July 2018

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Polyelectrostatic interactions of disordered ligands suggest a physical basis for ultrasensitivity

28 July 2018

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Hydrophobic association of alpha-helices, steric dewetting, and enthalpic barriers to protein folding

28 July 2018

1 reference

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Intermediates: ubiquitous species on folding energy landscapes?

28 July 2018

1 reference

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Water mediation in protein folding and molecular recognition

28 July 2018

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A protein folding pathway with multiple folding intermediates at atomic resolution

28 July 2018

1 reference

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Sparsely populated folding intermediates of the Fyn SH3 domain: matching native-centric essential dynamics and experiment

28 July 2018

1 reference

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Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

28 July 2018

1 reference

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Origins of Chevron Rollovers in Non-Two-State Protein Folding Kinetics

28 July 2018

1 reference

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Experimental evaluation of topological parameters determining protein-folding rates

28 July 2018

1 reference

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Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

28 July 2018

1 reference

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On hydrophobicity correlations in protein chains

28 July 2018

1 reference

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Contact order, transition state placement and the refolding rates of single domain proteins.

28 July 2018

1 reference

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Protein folding in the landscape perspective: chevron plots and non-Arrhenius kinetics

28 July 2018

1 reference

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

28 July 2018

1 reference

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Crystal structure of the ribosomal protein S6 from Thermus thermophilus

28 July 2018

1 reference

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Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

28 July 2018

1 reference

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Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

28 July 2018

1 reference

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

28 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Desolvation barrier effects are a likely contributor to the remarkable diversity in the folding rates of small proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Cooperativity principles in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Protein misfolding, evolution and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Characterization of the folding energy landscapes of computer generated proteins suggests high folding free energy barriers and cooperativity may be consequences of natural selection

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection

21 January 2018

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Folding with downhill behavior and low cooperativity of proteins

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Comparing folding codes for proteins and polymers

21 January 2018

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Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

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Criteria for downhill protein folding: calorimetry, chevron plot, kinetic relaxation, and single-molecule radius of gyration in chain models with subdued degrees of cooperativity.

21 January 2018

1 reference

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Temperature dependence of the distribution of the first passage time: results from discontinuous molecular dynamics simulations of an all-atom model of the second beta-hairpin fragment of protein G.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

21 January 2018

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Correspondence between anomalous m- and DeltaCp-values in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

21 January 2018

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Solvation effects and driving forces for protein thermodynamic and kinetic cooperativity: how adequate is native-centric topological modeling?

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Desolvation is a likely origin of robust enthalpic barriers to protein folding.

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Speeding protein folding beyond the G(o) model: how a little frustration sometimes helps

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Simulation, experiment, and evolution: understanding nucleation in protein S6 folding

21 January 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Gatekeepers in the ribosomal protein s6: thermodynamics, kinetics, and folding pathways revealed by a minimalist protein model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Antagonism, non-native interactions and non-two-state folding in S6 revealed by double-mutant cycle analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0911844107

Solvation and desolvation effects in protein folding: native flexibility, kinetic cooperativity and enthalpic barriers under isostability conditions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Small proteins fold through transition states with native-like topologies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20133730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0911844107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20133730%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20133730%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

20133730

1 reference