Fragrep: an efficient search tool for fragmented patterns in genomic sequences (Q34524468)

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21 January 2020

title

Fragrep: an efficient search tool for fragmented patterns in genomic sequences (English)

1 reference

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21 January 2020

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3

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21 January 2020

Axel Mosig

series ordinal

1

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21 January 2020

author name string

Katrin Sameith

series ordinal

2

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21 January 2020

publication date

1 February 2006

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Genomics Proteomics and Bioinformatics

21 January 2020

published in

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21 January 2020

volume

4

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21 January 2020

issue

1

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21 January 2020

page(s)

56-60

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Bipartite pattern discovery by entropy minimization-based multiple local alignment.

21 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

Novel non-coding RNAs in Dictyostelium discoideum and their expression during development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

dictyBase: a new Dictyostelium discoideum genome database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

RNAMotif, an RNA secondary structure definition and search algorithm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

Conserved features of Y RNAs: a comparison of experimentally derived secondary structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

Conserved features of Y RNAs revealed by automated phylogenetic secondary structure analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

BioOptimizer: a Bayesian scoring function approach to motif discovery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

A Discriminative Model for Identifying Spatial cis-Regulatory Modules

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5054030

10.1016/S1672-0229(06)60017-X

9 December 2018

Identifiers

DOI

1 reference

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21 January 2020

DBLP publication ID

journals/gpb/MosigSS06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

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21 January 2020

PubMed publication ID

16689703

1 reference