Sample processing obscures cancer-specific alterations in leukemic transcriptomes. (Q34601323)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

Sample processing obscures cancer-specific alterations in leukemic transcriptomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

0 references

1 reference

1

1 reference

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22 February 2020

Robert K. Bradley

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

author name string

Rhonda E Ries

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Janine O Ilagan

3

1 reference

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22 February 2020

Derek L Stirewalt

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Soheil Meshinchi

5

1 reference

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22 February 2020

language of work or name

English

0 references

publication date

10 November 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

22 February 2020

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

volume

111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

issue

47

1 reference

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22 February 2020

page(s)

16802-16807

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

Detecting and correcting systematic variation in large-scale RNA sequencing data

22 February 2020

cites work

1 reference

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RNA-seq: impact of RNA degradation on transcript quantification

7 July 2018

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Interferences from blood collection tube components on clinical chemistry assays

7 July 2018

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NOTCH2 and FLT3 gene mis-splicings are common events in patients with acute myeloid leukemia (AML): new potential targets in AML

7 July 2018

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Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia

7 July 2018

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Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

7 July 2018

1 reference

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RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells

7 July 2018

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PHF20 regulates NF-κB signalling by disrupting recruitment of PP2A to p65

7 July 2018

1 reference

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Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

7 July 2018

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Translational research in pediatrics II: blood collection, processing, shipping, and storage.

7 July 2018

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Relapse-specific mutations in NT5C2 in childhood acute lymphoblastic leukemia

7 July 2018

1 reference

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New fusion transcripts identified in normal karyotype acute myeloid leukemia

7 July 2018

1 reference

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Recurrent SETBP1 mutations in atypical chronic myeloid leukemia

7 July 2018

1 reference

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CUX1 is a haploinsufficient tumor suppressor gene on chromosome 7 frequently inactivated in acute myeloid leukemia

7 July 2018

1 reference

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The UCSC Genome Browser database: extensions and updates 2013.

7 July 2018

1 reference

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Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics

7 July 2018

1 reference

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High expression of lymphoid enhancer-binding factor-1 (LEF1) is a novel favorable prognostic factor in cytogenetically normal acute myeloid leukemia

7 July 2018

1 reference

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Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia

7 July 2018

1 reference

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Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma

7 July 2018

1 reference

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Gene Expression Profiles from Peripheral Blood Mononuclear Cells Are Sensitive to Short Processing Delays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4250124

Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

7 July 2018

1 reference

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PTEN transcript variants caused by illegitimate splicing in “aged” blood samples and EBV-transformed cell lines

7 July 2018

1 reference

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Tackling the widespread and critical impact of batch effects in high-throughput data

7 July 2018

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A multilevel model to address batch effects in copy number estimation using SNP arrays.

7 July 2018

1 reference

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Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis.

7 July 2018

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Identification of genes with abnormal expression changes in acute myeloid leukemia

7 July 2018

1 reference

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Adjusting batch effects in microarray expression data using empirical Bayes methods

7 July 2018

1 reference

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Exon skipping in the ATM gene in normal individuals: the effect of blood sample storage on RT-PCR analysis

7 July 2018

1 reference

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Levels of 5' RNA tags in plasma and buffy coat from EDTA blood increase with time

7 July 2018

1 reference

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Expression levels for many genes in human peripheral blood cells are highly sensitive to ex vivo incubation

21 January 2018

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Overexpression of LEF1 predicts unfavorable outcome in adult patients with B-precursor acute lymphoblastic leukemia.

21 January 2018

1 reference

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Improvement of molecular monitoring of residual disease in leukemias by bedside RNA stabilization

21 January 2018

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Stabilization of mRNA expression in whole blood samples.

21 January 2018

1 reference

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Specimen collection and handling: standardization of blood sample collection

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25385641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RT-PCR splicing analysis of the NF1 open reading frame

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25385641

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1413374111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

25385641

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25385641%20AND%20SRC:MED&resulttype=core&format=json