Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis (Q36508687)

14 August 2017

Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis (English)

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14 August 2017

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ChEBI release 2020-05-28

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ChEBI release 2020-05-28

Kye-Won Kim

2

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Laurence B Davin

object named as

Laurence B Davin

7

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author name string

Joaquim V Marques

1

1 reference

14 August 2017

Choonseok Lee

3

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14 August 2017

Michael A Costa

4

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14 August 2017

Gregory D May

5

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14 August 2017

John A Crow

6

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14 August 2017

Norman G Lewis

8

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14 August 2017

language of work or name

English

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publication date

16 November 2012

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14 August 2017

14

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Journal of Biological Chemistry

inferred from page(s)

published in

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14 August 2017

288

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14 August 2017

1

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14 August 2017

466-479

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Bifunctional cis-abienol synthase from Abies balsamea discovered by transcriptome sequencing and its implications for diterpenoid fragrance production

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

30 September 2017

1 reference

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De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome

30 September 2017

1 reference

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Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Evaluating the fidelity of de novo short read metagenomic assembly using simulated data

30 September 2017

1 reference

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Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.

30 September 2017

1 reference

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454 EST analysis detects genes putatively involved in ginsenoside biosynthesis in Panax ginseng

30 September 2017

1 reference

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A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus

30 September 2017

1 reference

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Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.

30 September 2017

1 reference

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Integration of deep transcriptome and proteome analyses reveals the components of alkaloid metabolism in opium poppy cell cultures

30 September 2017

1 reference

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De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

30 September 2017

1 reference

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Nonlinear least-squares data fitting in Excel spreadsheets.

30 September 2017

1 reference

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De novo assembly of human genomes with massively parallel short read sequencing

30 September 2017

1 reference

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Whole genome amplification and de novo assembly of single bacterial cells

30 September 2017

1 reference

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De novo transcriptome assembly with ABySS.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Next-generation DNA sequencing techniques

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

ABySS: a parallel assembler for short read sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Formation of two methylenedioxy bridges by a Sesamum CYP81Q protein yielding a furofuran lignan, (+)-sesamin

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Podophyllotoxin: distribution, sources, applications and new cytotoxic derivatives

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

THE CARBON MONOXIDE-BINDING PIGMENT OF LIVER MICROSOMES. II. SOLUBILIZATION, PURIFICATION, AND PROPERTIES

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Beta-peltatin 6-O-methyltransferase from suspension cultures of Linum nodiflorum

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Molecular cloning and characterization of CYP719, a methylenedioxy bridge-forming enzyme that belongs to a novel P450 family, from cultured Coptis japonica cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Biosynthesis of podophyllotoxin in Linum album cell cultures.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Secoisolariciresinol dehydrogenase purification, cloning, and functional expression. Implications for human health protection

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

30 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

30 September 2017

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

Dirigent proteins and dirigent sites explain the mystery of specificity of radical precursor coupling in lignan and lignin biosynthesis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Stereoselective bimolecular phenoxy radical coupling by an auxiliary (dirigent) protein without an active center

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Yeast expression of animal and plant P450s in optimized redox environments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

The chemical and biological route from podophyllotoxin glucoside to etoposide: ninth Cain memorial Award lecture

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Tablet--next generation sequence assembly visualization

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

Formation of lignans (-)-secoisolariciresinol and (-)-matairesinol with Forsythia intermedia cell-free extracts

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3537044

The Intramolecular Carboxyarylation Approach to Podophyllotoxin

28 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

Deoxypodophyllotoxin 6-hydroxylase, a cytochrome P450 monooxygenase from cell cultures of Linum flavum involved in the biosynthesis of cytotoxic lignans

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

Cell type-specific localization of transcripts encoding nine consecutive enzymes involved in protoberberine alkaloid biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

Characterization of two methylenedioxy bridge-forming cytochrome P450-dependent enzymes of alkaloid formation in the Mexican prickly poppy Argemone mexicana

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

Molecular cloning and characterization of methylenedioxy bridge-forming enzymes involved in stylopine biosynthesis in Eschscholzia californica.

21 January 2018

1 reference

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Evidence for the monophyletic evolution of benzylisoquinoline alkaloid biosynthesis in angiosperms

21 January 2018

1 reference

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Plant cytochrome P450s from moss to poplar

21 January 2018

1 reference

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A P450-centric view of plant evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.400689

A new and efficient strategy for the synthesis of podophyllotoxin and its analogues

21 January 2018

1 reference

12 December 2020

Dirigent-mediated podophyllotoxin biosynthesis in Linum flavum and Podophyllum peltatum

1 reference

12 December 2020

Lignans from Dysosma versipellis with inhibitory effects on prostate cancer cell lines

1 reference

12 December 2020

Aryltetralin-lignan formation in two different cell suspension cultures of Linum album: deoxypodophyllotoxin 6-hydroxylase, a key enzyme for the formation of 6-methoxypodophyllotoxin

1 reference

12 December 2020

Transcriptome profiling and insilico analysis of Gynostemma pentaphyllum using a next generation sequencer

1 reference

12 December 2020

A combined HPLC-UV and HPLC-MS method for the identification of lignans and its application to the lignans of Linum usitatissimum L. and L. bienne Mill

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12 December 2020

High-performance liquid chromatography/mass spectrometric identification of dibenzylbutyrolactone-type lignans: insights into electrospray ionization tandem mass spectrometric fragmentation of lign-7-eno-9,9'-lactones and application to the lignans

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12 December 2020

Lignanglucoside ausPodophyllum peltatum L. 7. Mitteilung über mitosehemmende Naturstoffe

1 reference

COCI

https://opencitations.net/index/api/v1/citations/10.1002/HLCA.19570400525

9 March 2024

Identifiers

DOI

10.1074/JBC.M112.400689

1 reference

14 August 2017

1 reference

14 August 2017

PubMed publication ID

23161544

1 reference