RNA-guided DNA rearrangements in ciliates: is the best genome defence a good offence? (Q37986770)

26 August 2017

title

RNA-guided DNA rearrangements in ciliates: is the best genome defence a good offence? (English)

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26 August 2017

3

Sandra Duharcourt

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26 August 2017

1

Robert S Coyne

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26 August 2017

author name string

Maoussi Lhuillier-Akakpo

series ordinal

2

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26 August 2017

publication date

18 April 2012

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26 August 2017

number of pages

17

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based on heuristic

inferred from page(s)

published in

Biology of the Cell

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26 August 2017

volume

104

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26 August 2017

issue

6

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26 August 2017

page(s)

309-325

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Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

26 August 2017

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Two GW repeat proteins interact with Tetrahymena thermophila argonaute and promote genome rearrangement

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Regulation of macronuclear DNA content in Paramecium tetraurelia

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Large-scale genome remodelling by the developmentally programmed elimination of germ line sequences in the ciliate Paramecium

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Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling

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The CNA1 histone of the ciliate Tetrahymena thermophila is essential for chromosome segregation in the germline micronucleus

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Communication between parental and developing genomes during tetrahymena nuclear differentiation is likely mediated by homologous RNAs

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Non-Mendelian, heritable blocks to DNA rearrangement are induced by loading the somatic nucleus of Tetrahymena thermophila with germ line-limited DNA.

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Nongenic, bidirectional transcription precedes and may promote developmental DNA deletion in Tetrahymena thermophila

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DNA elimination in ciliates: transposon domestication and genome surveillance

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A domesticated piggyBac transposase plays key roles in heterochromatin dynamics and DNA cleavage during programmed DNA deletion in Tetrahymena thermophila

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RITS-connecting transcription, RNA interference, and heterochromatin assembly in fission yeast

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Centromeric histone H3 is essential for vegetative cell division and for DNA elimination during conjugation in Tetrahymena thermophila

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Epigenetic self-regulation of developmental excision of an internal eliminated sequence on Paramecium tetraurelia.

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Homology-dependent maternal inhibition of developmental excision of internal eliminated sequences in Paramecium tetraurelia.

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Developmental genome rearrangements in ciliates: a natural genomic subtraction mediated by non-coding transcripts.

21 January 2018

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Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline

21 January 2018

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Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

21 January 2018

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Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

21 January 2018

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Mendelian and Non-Mendelian Mutations Affecting Surface Antigen Expression in Paramecium tetraurelia

21 January 2018

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New telomere formation coupled with site-specific chromosome breakage in Tetrahymena thermophila

21 January 2018

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Developmentally controlled telomere addition in wild-type and mutant paramecia

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RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia.

21 January 2018

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Conserved themes in small-RNA-mediated transposon control

21 January 2018

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Developmentally programmed excision of internal DNA sequences in Paramecium aurelia

21 January 2018

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Processing of double-strand breaks is involved in the precise excision of paramecium internal eliminated sequences

21 January 2018

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Developmentally programmed DNA splicing in Paramecium reveals short-distance crosstalk between DNA cleavage sites.

21 January 2018

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A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

DNA synthesis, methylation and degradation during conjugation in Tetrahymena thermophila

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

A member of a repeat family is the source of an insertion-deletion polymorphism inside a developmentally eliminated sequence of Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Modular structure in developmentally eliminated DNA in Tetrahymena may be a consequence of frequent insertions and deletions

21 January 2018

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The unusual way to make a genetically active nucleus.

21 January 2018

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Ancestral roles of small RNAs: an Ago-centric perspective

21 January 2018

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RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

21 January 2018

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Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining

21 January 2018

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ICBP90, a novel methyl K9 H3 binding protein linking protein ubiquitination with heterochromatin formation

21 January 2018

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The CRISPR system: small RNA-guided defense in bacteria and archaea

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

Methylation of adenine in the nuclear DNA of Tetrahymena is internucleosomal and independent of histone H1

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

Consensus inverted terminal repeat sequence of Paramecium IESs: resemblance to termini of Tc1-related and Euplotes Tec transposons.

21 January 2018

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Is evolution Darwinian or/and Lamarckian?

21 January 2018

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DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

2'-O-methylation stabilizes Piwi-associated small RNAs and ensures DNA elimination in Tetrahymena.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Copy number control in the Tetrahymena macronuclear genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Two classes of endogenous small RNAs in Tetrahymena thermophila

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

On the connection between RNAi and heterochromatin at centromeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Silencing-associated and meiosis-specific small RNA pathways in Paramecium tetraurelia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Diverse small non-coding RNAs in RNA interference pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

The mechanism of vertebrate nonhomologous DNA end joining and its role in V(D)J recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Elimination of foreign DNA during somatic differentiation in Tetrahymena thermophila shows position effect and is dosage dependent

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Germ line transcripts are processed by a Dicer-like protein that is essential for developmentally programmed genome rearrangements of Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Plant Homeodomain (PHD) Fingers of CHD4 Are Histone H3-binding Modules with Preference for Unmodified H3K4 and Methylated H3K9

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

RNA and protein synthesis during meiotic prophase in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

The conjugation-specific Die5 protein is required for development of the somatic nucleus in both Paramecium and Tetrahymena.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

piggyBac can bypass DNA synthesis during cut and paste transposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

RNA polymerase II localizes in Tetrahymena thermophila meiotic micronuclei when micronuclear transcription associated with genome rearrangement occurs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Zygotic expression of the double-stranded RNA binding motif protein Drb2p is required for DNA elimination in the ciliate Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Binding of the CHD4 PHD2 finger to histone H3 is modulated by covalent modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Excision of micronuclear-specific DNA requires parental expression of pdd2p and occurs independently from DNA replication in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

The Tetrahymena argonaute-binding protein Giw1p directs a mature argonaute-siRNA complex to the nucleus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Nowa1p and Nowa2p: novel putative RNA binding proteins involved in trans-nuclear crosstalk in Paramecium tetraurelia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Functional study of genes essential for autogamy and nuclear reorganization in Paramecium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Resident aliens: the Tc1/mariner superfamily of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

A "mille-feuille" of silencing: epigenetic control of transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

The SM19 gene, required for duplication of basal bodies in Paramecium, encodes a novel tubulin, eta-tubulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Keeping the soma free of transposons: programmed DNA elimination in ciliates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Interactions between transposable elements and Argonautes have (probably) been shaping the Drosophila genome throughout evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

PIWI-interacting small RNAs: the vanguard of genome defence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Programmed DNA degradation and nucleolar biogenesis occur in distinct organelles during macronuclear development in Tetrahymena.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Genetics of cellular differentiation: stable nuclear differentiation in eucaryotic unicells

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

TATA-binding protein and nuclear differentiation in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Cytologic and autoradiographic studies of the micronucleus at meiotic prophase in Tetrahymena pyriformis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Methylation of histone h3 at lysine 9 targets programmed DNA elimination in tetrahymena

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

RNA interference and heterochromatin assembly

21 January 2018

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https://api.crossref.org/works/10.1111%2FBOC.201100057

Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

N6-methyl-adenine: an epigenetic signal for DNA-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

A novel family of mobile genetic elements is limited to the germline genome in Tetrahymena thermophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

DNA elimination in Tetrahymena: a developmental process involving extensive breakage and rejoining of DNA at defined sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

Programmed DNA deletion as an RNA-guided system of genome defense.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

The controlling sequence for site-specific chromosome breakage in Tetrahymena.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FBOC.201100057

21 January 2018

Identifiers

DOI

10.1111/BOC.201100057

1 reference

26 August 2017

1 reference