Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA. (Q39305180)

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15 January 2020

title

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA (English)

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15 January 2020

1

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15 January 2020

Scott Luro

3

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15 January 2020

author name string

Michal Halpert

2

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15 January 2020

Gadi Schuster

4

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15 January 2020

David B Stern

5

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15 January 2020

language of work or name

English

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publication date

27 October 2011

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15 January 2020

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15 January 2020

volume

17

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15 January 2020

issue

12

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15 January 2020

page(s)

2165-2176

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Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold

15 January 2020

cites work

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Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth

11 September 2017

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What is the role of RNase J in mRNA turnover?

11 September 2017

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Euryarchaeal beta-CASP proteins with homology to bacterial RNase J Have 5'- to 3'-exoribonuclease activity.

11 September 2017

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Chloroplast RNA metabolism

11 September 2017

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11 September 2017

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11 September 2017

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11 September 2017

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11 September 2017

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11 September 2017

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The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

11 September 2017

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Structural insights into the dual activity of RNase J

11 September 2017

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Analysis of the human polynucleotide phosphorylase (PNPase) reveals differences in RNA binding and response to phosphate compared to its bacterial and chloroplast counterparts

11 September 2017

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5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA

11 September 2017

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Identification of small non-coding RNAs from mitochondria and chloroplasts

11 September 2017

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Relaxed transcription in Arabidopsis mitochondria is counterbalanced by RNA stability control mediated by polyadenylation and polynucleotide phosphorylase

11 September 2017

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Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach

11 September 2017

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The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond

11 September 2017

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RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

11 September 2017

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Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E.

11 September 2017

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Identification of genes required for embryo development in Arabidopsis

11 September 2017

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Domain analysis of the chloroplast polynucleotide phosphorylase reveals discrete functions in RNA degradation, polyadenylation, and sequence homology with exosome proteins

11 September 2017

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PNPase activity determines the efficiency of mRNA 3'-end processing, the degradation of tRNA and the extent of polyadenylation in chloroplasts

11 September 2017

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In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.

11 September 2017

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Domain analysis of the plant DNA-binding protein GT1a: requirement of four putative alpha-helices for DNA binding and identification of a novel oligomerization region

11 September 2017

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11 September 2017

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Nuclear and chloroplast mutations affect the synthesis or stability of the chloroplast psbC gene product in Chlamydomonas reinhardtii

11 September 2017

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Recognition of prokaryotic transcription terminators by spinach chloroplast RNA polymerase

11 September 2017

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A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.

14 September 2017

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A novel RNA gene in the tobacco plastid genome: its possible role in the maturation of 16S rRNA.

25 September 2017

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Identification of an RNase J ortholog in Sulfolobus solfataricus: implications for 5'-to-3' directional decay and 5'-end protection of mRNA in Crenarchaeota

25 September 2017

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Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro

25 September 2017

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Knockout of the plastid RNase E leads to defective RNA processing and chloroplast ribosome deficiency.

15 June 2018

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5' to 3' exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways

15 June 2018

1 reference

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3'-Inverted repeats in plant mitochondrial mRNAs are processing signals rather than transcription terminators

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222129

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

15 June 2018

1 reference

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A small chloroplast RNA may be required for trans-splicing in chlamydomonas reinhardtii

15 June 2018

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Distinct activities of several RNase J proteins in methanogenic archaea.

15 June 2018

1 reference

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Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3'-end maturation and intron degradation.

21 August 2018

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Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.

21 August 2018

1 reference

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A long antisense RNA in plant chloroplasts

21 August 2018

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MRL1, a conserved Pentatricopeptide repeat protein, is required for stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis.

21 August 2018

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Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis

21 August 2018

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RNase J is involved in the 5'-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti

21 August 2018

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The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.

21 August 2018

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Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis

21 August 2018

1 reference

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Molecular identification and function of cis- and trans-acting determinants for petA transcript stability in Chlamydomonas reinhardtii chloroplasts

21 August 2018

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Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1.

21 August 2018

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Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

21 August 2018

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The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.

21 August 2018

1 reference

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Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries.

21 August 2018

1 reference

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CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease

21 August 2018

1 reference

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Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas

21 August 2018

1 reference

12 December 2020

5'-exoribonuclease 1: Xrn1

1 reference

12 December 2020

Nuclear Mutants of Maize with Defects in Chloroplast Polysome Assembly Have Altered Chloroplast RNA Metabolism

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12 December 2020

The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes

1 reference

12 December 2020

A promoter switch that can rescue a plant sigma factor mutant

1 reference

12 December 2020

An mRNA 3' processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts

1 reference

12 December 2020

mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale

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12 December 2020

Identifiers

DOI

10.1261/RNA.028043.111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22033332%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22033332%20AND%20SRC:MED&resulttype=core&format=json

15 January 2020

PubMed publication ID

22033332

1 reference