Mechanism of R-loop formation at immunoglobulin class switch sequences (Q41887873)

13 October 2017

Mechanism of R-loop formation at immunoglobulin class switch sequences (English)

1 reference

13 October 2017

Deepankar Roy

1

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13 October 2017

Kefei Yu

series ordinal

2

1 reference

13 October 2017

Michael R Lieber

series ordinal

3

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13 October 2017

language of work or name

English

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publication date

22 October 2007

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Molecular and Cellular Biology

13 October 2017

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13 October 2017

28

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13 October 2017

1

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13 October 2017

50-60

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describes a project that uses

13 October 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2223306/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region

1 reference

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Regulation of activation induced deaminase via phosphorylation

5 June 2018

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Detection of chromatin-associated single-stranded DNA in regions targeted for somatic hypermutation.

5 June 2018

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Structural phylogenetic analysis of activation-induced deaminase function

5 June 2018

1 reference

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Ig class switching: targeting the recombinational mechanism

5 June 2018

1 reference

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Downstream boundary of chromosomal R-loops at murine switch regions: implications for the mechanism of class switch recombination

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Nucleotide sequence and DNA secondary structure, as well as replication protein A, modulate the single-stranded abasic endonuclease activity of APE1.

5 June 2018

1 reference

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AID from bony fish catalyzes class switch recombination

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Antibody class switch recombination: roles for switch sequences and mismatch repair proteins

5 June 2018

1 reference

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Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability

5 June 2018

1 reference

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Shifts in targeting of class switch recombination sites in mice that lack mu switch region tandem repeats or Msh2

5 June 2018

1 reference

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Fine-structure analysis of activation-induced deaminase accessibility to class switch region R-loops

5 June 2018

1 reference

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Evolution of isotype switching

5 June 2018

1 reference

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Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Class-switch recombination: interplay of transcription, DNA deamination and DNA repair

5 June 2018

1 reference

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Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

5 June 2018

1 reference

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Altered somatic hypermutation and reduced class-switch recombination in exonuclease 1-mutant mice

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

The Sμ Tandem Repeat Region Is Critical for Ig Isotype Switching in the Absence of Msh2

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

The problem of hypernegative supercoiling and R-loop formation in transcription

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Specific expression of activation-induced cytidine deaminase (AID), a novel member of the RNA-editing deaminase family in germinal center B cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Measurement of unrestrained negative supercoiling and topological domain size in living human cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Properties of a primer RNA-DNA hybrid at the mouse mitochondrial DNA leading-strand origin of replication

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

RNA-DNA hybrid formation at the human mitochondrial heavy-strand origin ceases at replication start sites: an implication for RNA-DNA hybrids serving as primers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

RNA:DNA complex formation upon transcription of immunoglobulin switch regions: implications for the mechanism and regulation of class switch recombination

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Replacement of germ-line epsilon promoter by gene targeting alters control of immunoglobulin heavy chain class switching

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

DNA sequences at immunoglobulin switch region recombination sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Transcription induces the formation of a stable RNA.DNA hybrid in the immunoglobulin alpha switch region.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Specificity of immunoglobulin heavy chain switch correlates with activity of germline heavy chain genes prior to switching.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Complete nucleotide sequence of the murine gamma 3 switch region and analysis of switch recombination sites in two gamma 3-expressing hybridomas

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Molecular aspects of heavy-chain class switching

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Products and implied mechanism of H chain switch recombination

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Induction of RNA-stabilized DMA conformers by transcription of an immunoglobulin switch region

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Evolution of class switch recombination function in fish activation-induced cytidine deaminase, AID.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

An evolutionarily conserved target motif for immunoglobulin class-switch recombination

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

DNA substrate length and surrounding sequence affect the activation-induced deaminase activity at cytidine

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

Human uracil-DNA glycosylase deficiency associated with profoundly impaired immunoglobulin class-switch recombination

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2223306

A mechanism of formation of a persistent hybrid between elongating RNA and template DNA

18 August 2018

1 reference

12 December 2020

Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone Composition

1 reference

12 December 2020

Transcription-induced cleavage of immunoglobulin switch regions by nucleotide excision repair nucleases in vitro

1 reference

12 December 2020

The influence of transcriptional orientation on endogenous switch region function

1 reference

12 December 2020

Identifiers

DOI

10.1128/MCB.01251-07

1 reference

13 October 2017

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13 October 2017

PubMed publication ID

17954560

1 reference