Dynamics of the minimally frustrated helices determine the hierarchical folding of small helical proteins (Q47221982)

12 January 2018

title

Dynamics of the minimally frustrated helices determine the hierarchical folding of small helical proteins (English)

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author name string

Compiani M

series ordinal

1

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Casadio R

series ordinal

3

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language of work or name

English

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publication date

12 May 2004

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12 January 2018

published in

Physical Review E

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volume

69

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issue

5 Pt 1

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page(s)

051905

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Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

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Toward an outline of the topography of a realistic protein-folding funnel

21 January 2018

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Theory of protein folding: the energy landscape perspective

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Deciphering the timescales and mechanisms of protein folding using minimal off-lattice models

21 January 2018

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What can we learn about protein folding from Ising-like models?

21 January 2018

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Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

21 January 2018

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Is protein folding hierarchic? I. Local structure and peptide folding

21 January 2018

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Is protein folding hierarchic? II. Folding intermediates and transition states

21 January 2018

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Folding dynamics and mechanism of beta-hairpin formation

21 January 2018

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A statistical mechanical model for beta-hairpin kinetics.

21 January 2018

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Mechanisms and kinetics of beta-hairpin formation

21 January 2018

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De novo design of native proteins: characterization of proteins intended to fold into antiparallel, rop-like, four-helix bundles.

21 January 2018

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21 January 2018

Helical protein design

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De novo design and structural characterization of an alpha-helical hairpin peptide: a model system for the study of protein folding intermediates

21 January 2018

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Protein folding dynamics: the diffusion-collision model and experimental data

21 January 2018

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An entropy criterion to detect minimally frustrated intermediates in native proteins

21 January 2018

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Fast events in protein folding: relaxation dynamics of secondary and tertiary structure in native apomyoglobin

21 January 2018

1 reference

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Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

21 January 2018

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Helix nucleation kinetics from molecular simulations in explicit solvent

21 January 2018

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The early folding kinetics of apomyoglobin

21 January 2018

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Comparison of NH Exchange and Circular Dichroism as Techniques for Measuring the Parameters of the Helix−Coil Transition in Peptides

21 January 2018

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Elucidating the folding problem of helical peptides using empirical parameters

21 January 2018

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CD and 1H-NMR studies on the conformational properties of peptide fragments from the C-terminal domain of thermolysin.

21 January 2018

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Folding propensities of peptide fragments of myoglobin

21 January 2018

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Molecular dynamics simulations of isolated helices of myoglobin

21 January 2018

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Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

21 January 2018

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Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

21 January 2018

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Application of the diffusion-collision model to the folding of three-helix bundle proteins.

21 January 2018

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Single amino acid substitutions influencing the folding pathway of the phage P22 tail spike endorhamnosidase

21 January 2018

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Foldons, protein structural modules, and exons

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Favourable native-like helical local interactions can accelerate protein folding

21 January 2018

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How do small single-domain proteins fold?

21 January 2018

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Preorganized secondary structure as an important determinant of fast protein folding

21 January 2018

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Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

21 January 2018

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A surprising simplicity to protein folding.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

The roles of stability and contact order in determining protein folding rates.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Contact order, transition state placement and the refolding rates of single domain proteins.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Local interactions dominate folding in a simple protein model.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

21 January 2018

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21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Acceleration of the folding of acylphosphatase by stabilization of local secondary structure

21 January 2018

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

Stabilisation of α-helices by site-directed mutagenesis reveals the importance of secondary structure in the transition state for acylphosphatase folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

21 January 2018

Protein-folding dynamics

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https://api.crossref.org/works/10.1103%2FPHYSREVE.69.051905

10.1103/PHYSREVE.69.051905

21 January 2018

Identifiers

DOI

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12 January 2018

ADS bibcode

2004PhRvE..69e1905C

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12 January 2018