Integrated prediction of protein folding and unfolding rates from only size and structural class (Q47371880)

15 January 2018

title

Integrated prediction of protein folding and unfolding rates from only size and structural class (English)

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15 January 2018

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1

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15 January 2018

author name string

Victor Muñoz

series ordinal

2

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15 January 2018

language of work or name

English

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publication date

14 June 2011

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15 January 2018

Physical Chemistry Chemical Physics

published in

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15 January 2018

volume

13

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15 January 2018

issue

38

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15 January 2018

page(s)

17030-17043

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15 January 2018

Funnels, pathways, and the energy landscape of protein folding: a synthesis

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Insights from coarse-grained Gō models for protein folding and dynamics

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Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

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Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues

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Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

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A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

21 January 2018

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Folding funnels and energy landscapes of larger proteins within the capillarity approximation

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Scaling of folding times with protein size

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Contact order revisited: influence of protein size on the folding rate

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Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.

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Protein folding theory: from lattice to all-atom models

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On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate

21 January 2018

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Folding rate prediction using total contact distance

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A statistical method for predicting protein unfolding rates from amino acid sequence.

21 January 2018

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21 January 2018

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Protein folding rates and stability: how much is there beyond size?

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Protein folding kinetics: barrier effects in chemical and thermal denaturation experiments

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Impact of local and non-local interactions on thermodynamics and kinetics of protein folding

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A statistical mechanical model for beta-hairpin kinetics.

21 January 2018

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Local versus nonlocal interactions in protein folding and stability--an experimentalist's point of view

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Expanding the realm of ultrafast protein folding: gpW, a midsize natural single-domain with alpha+beta topology that folds downhill.

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Dynamics of one-state downhill protein folding

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Navigating the downhill protein folding regime via structural homologues

21 January 2018

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Direct observation of downhill folding of lambda-repressor in a microfluidic mixer

21 January 2018

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Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins

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21 January 2018

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The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

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Prediction of protein folding rates from the amino acid sequence-predicted secondary structure.

21 January 2018

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Contact order dependent protein folding rates: kinetic consequences of a cooperative interplay between favorable nonlocal interactions and local conformational preferences.

21 January 2018

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Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

21 January 2018

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Protein folding in the landscape perspective: chevron plots and non-Arrhenius kinetics

21 January 2018

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Insights into protein folding mechanisms from large scale analysis of mutational effects

21 January 2018

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The denatured state of Engrailed Homeodomain under denaturing and native conditions.

21 January 2018

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Hammond behavior versus ground state effects in protein folding: evidence for narrow free energy barriers and residual structure in unfolded states

21 January 2018

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Atom-by-atom analysis of global downhill protein folding

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CP20402E

Ultrafast folding of WW domains without structured aromatic clusters in the denatured state

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CP20402E

Dynamics, energetics, and structure in protein folding

21 January 2018

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Tuning lambda6-85 towards downhill folding at its melting temperature

21 January 2018

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Coordinate-dependent diffusion in protein folding

21 January 2018

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Elucidating the folding problem of helical peptides using empirical parameters

21 January 2018

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Unifying features in protein-folding mechanisms

21 January 2018

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Coarse-grained models for proteins

21 January 2018

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Cooperativity and protein folding rates

21 January 2018

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Local interactions and the optimization of protein folding

21 January 2018

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Experimental identification of downhill protein folding.

21 January 2018

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Thermodynamics and kinetics of folding of common-type acylphosphatase: comparison to the highly homologous muscle isoenzyme.

21 January 2018

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Slow folding of muscle acylphosphatase in the absence of intermediates.

21 January 2018

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Ultra-fast barrier-limited folding in the peripheral subunit-binding domain family

21 January 2018

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Phi-analysis of the folding of the B domain of protein A using multiple optical probes.

21 January 2018

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Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

21 January 2018

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Role of a solvent-exposed aromatic cluster in the folding of Escherichia coli CspA.

21 January 2018

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Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins

21 January 2018

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Extremely rapid protein folding in the absence of intermediates

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CP20402E

Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein

21 January 2018

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https://api.crossref.org/works/10.1039%2FC1CP20402E

The folding kinetics and thermodynamics of the Fyn-SH3 domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Slow cooperative folding of a small globular protein HPr.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Scattered Hammond plots reveal second level of site-specific information in protein folding: phi' (beta++).

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Critical role of beta-hairpin formation in protein G folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Analysis of the pH-dependent folding and stability of histidine point mutants allows characterization of the denatured state and transition state for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Folding dynamics of the src SH3 domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

The effect of boundary selection on the stability and folding of the third fibronectin type III domain from human tenascin

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

A breakdown of symmetry in the folding transition state of protein L

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

Structure of the transition state in the folding process of human procarboxypeptidase A2 activation domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC1CP20402E

21 January 2018

Identifiers

DOI

10.1039/C1CP20402E

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15 January 2018

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15 January 2018