Solvation effects on the sequence variability of DNA double helical conformations. (Q52476282)

2 May 2018

title

Solvation effects on the sequence variability of DNA double helical conformations. (English)

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2 May 2018

author name string

Raghunathan G

1

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Jernigan RL

2

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Ting KL

3

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Sarai A

4

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publication date

1 August 1990

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Journal of Biomolecular Structure and Dynamics

published in

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volume

8

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issue

1

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page(s)

187-198

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Crystal structure analysis of a complete turn of B-DNA

cites work

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The flexible DNA double helix. II. Superhelix formation

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Torsional flexibility of B-DNA as revealed by conformational analysis.

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Importance of DNA stiffness in protein-DNA binding specificity

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Ring closure probabilities for DNA fragments by Monte Carlo simulation.

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Interaction of chloroquine with linear and supercoiled DNAs. Effect on the torsional dynamics, rigidity, and twist energy parameter

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Energetics of DNA twisting. I. Relation between twist and cyclization probability.

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DNA bending and its relation to nucleosome positioning.

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Sequence periodicities in chicken nucleosome core DNA.

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DNA sequence determinants of CAP-induced bending and protein binding affinity.

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A theoretical study of the aqueous hydration of canonical B d(CGCGAATTCGCG): Monte Carlo simulation and comparison with crystallographic ordered water sites

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Theoretical considerations on the "spine of hydration" in the minor groove of d(CGCGAATTCGCG).d(GCGCTTAAGCGC): Monte Carlo computer simulation

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Solvent interactions stabilising nucleic acid conformers

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Origin of DNA helical structure and its sequence dependence

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Solvation energy in protein folding and binding

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Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

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The interpretation of protein structures: Estimation of static accessibility

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Solvent-accessible surfaces of proteins and nucleic acids

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Sequence dependence of DNA conformational flexibility

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Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

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The structure of an oligo(dA).oligo(dT) tract and its biological implications

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A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

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Structure of an alternating-B DNA helix and its relationship to A-tract DNA

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Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

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Chromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence

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Theory of twisting and bending of chain macromolecules; analysis of the fluorescence depolarization of DNA

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Sequence-directed curvature of DNA

21 January 2018

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The molecular structure of d(ICpCpGpG), a fragment of right-handed double helical A-DNA.

21 January 2018

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Sequence-dependent helical periodicity of DNA

21 January 2018

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DNA conformation is determined by economics in the hydration of phosphate groups

21 January 2018

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DNA and the hydration economy

21 January 2018

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DNA and the hydration economy

21 January 2018

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10.1080/07391102.1990.10507797

21 January 2018

Identifiers

DOI

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2 May 2018

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2 May 2018