BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. (Q55518660)

14 July 2018

title

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins. (English)

1 reference

14 July 2018

1 reference

Auke J van Heel

1

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14 July 2018

Anne de Jong

2

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14 July 2018

Chunxu Song

3

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14 July 2018

Jakob H Viel

4

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14 July 2018

Jan Kok

5

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14 July 2018

Oscar P Kuipers

6

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14 July 2018

language of work or name

English

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publication date

1 July 2018

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14 July 2018

published in

Nucleic Acids Research

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14 July 2018

volume

46

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14 July 2018

issue

W1

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14 July 2018

page(s)

W278-W281

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14 July 2018

Creative Commons Attribution-NonCommercial 4.0 International

copyright license

start time

21 May 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links

1 reference

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PRISM 3: expanded prediction of natural product chemical structures from microbial genomes

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

UniProt: the universal protein knowledgebase

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Minimum Information about a Biosynthetic Gene cluster.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

BACTIBASE second release: a database and tool platform for bacteriocin characterization

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Identifying bacterial genes and endosymbiont DNA with Glimmer

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

BAGEL: a web-based bacteriocin genome mining tool.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Basic local alignment search tool

15 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Draft Genome Sequence of Streptomyces sp. Strain JV178, a Producer of Clifednamide-Type Polycyclic Tetramate Macrolactams.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Genome-guided identification of novel head-to-tail cyclized antimicrobial peptides, exemplified by the discovery of pumilarin.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Plantaricyclin A, a Novel Circular Bacteriocin Produced by Lactobacillus plantarum NI326: Purification, Characterization, and Heterologous Production.

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030817

Discovery, Production and Modification of Five Novel Lantibiotics Using the Promiscuous Nisin Modification Machinery.

12 August 2018

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Biosynthesis of the Novel Macrolide Antibiotic Anthracimycin.

12 August 2018

1 reference

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Draft Genome Sequence of Bacillus velezensis GF610, a Producer of Potent Anti-Listeria Agents

12 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29788290

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKY383

1 reference

14 July 2018

DBLP publication ID

journals/nar/HeelJSVKK18

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 July 2018

PubMed publication ID

29788290

1 reference

14 July 2018