Chapter 4 Microbial Distribution in Soils (Q59245049)

1

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J.W. Crawford

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N. Nunan

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W. Otten

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A. Spiers

Statistical mechanics of complex networks

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publication date

2008

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published in

Advances in Agronomy

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page(s)

81-121

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cites work

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Trace metal exposure of soil bacteria depends on their position in the soil matrix

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Physiological and morphological responses of the soil bacterium Rhodococcus opacus strain PD630 to water stress

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7 January 2021

Bacterial tactic responses

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7 January 2021

Physical morphology and surface properties of unsaturated Pseudomonas putida biofilms

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Microbial landscapes: new paths to biofilm research.

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7 January 2021

Self-engineering capabilities of bacteria

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7 January 2021

Generic modelling of cooperative growth patterns in bacterial colonies.

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7 January 2021

Biofilms: the matrix revisited

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7 January 2021

Unsaturated water flow across soil aggregate contacts

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7 January 2021

Reduced water availability influences the dynamics, development, and ultrastructural properties of Pseudomonas putida biofilms

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7 January 2021

Alginate production by Pseudomonas putida creates a hydrated microenvironment and contributes to biofilm architecture and stress tolerance under water-limiting conditions

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7 January 2021

Clay- or sand-polysaccharide associations as models for the interface between micro-organisms and soil: water related properties and microstructure

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7 January 2021

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7 January 2021

Biofilm formation by plant-associated bacteria

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7 January 2021

Quorum sensing and swarming migration in bacteria.

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7 January 2021

Quorum signal molecules as biosurfactants affecting swarming in Rhizobium etli.

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7 January 2021

Genome-based discovery, structure prediction and functional analysis of cyclic lipopeptide antibiotics inPseudomonasspecies

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7 January 2021

A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

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7 January 2021

Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains

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7 January 2021

The porous surface model, a novel experimental system for online quantitative observation of microbial processes under unsaturated conditions

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7 January 2021

Quorum size of Pseudomonas syringae is small and dictated by water availability on the leaf surface

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7 January 2021

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7 January 2021

Biomass recycling and the origin of phenotype in fungal mycelia.

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7 January 2021

Modelling interactions in fungi

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7 January 2021

Three-dimensional microorganization of the soil-root-microbe system.

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7 January 2021

Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field

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7 January 2021

A geostatistical analysis of small-scale spatial variability in bacterial abundance and community structure in salt marsh creek bank sediments

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfaces

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7 January 2021

A wall of funnels concentrates swimming bacteria

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7 January 2021

Differences in microbial biomass, organic carbon, and dye sorption between flow and no-flow regions of unsaturated soil

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7 January 2021

Cellulose modulates biofilm formation by counteracting curli-mediated colonization of solid surfaces in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Bacterial biofilms: from the natural environment to infectious diseases

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Effect of bulk density on the spatial organisation of the fungus Rhizoctonia solani in soil

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Relationships between habitable pore space, soil biota and mineralization rates in grassland soils

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

An ecological perspective on bacterial biodiversity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Development of an agar lift-DNA/DNA hybridization technique for use in visualization of the spatial distribution of Eubacteria on soil surfaces

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Numerical analysis of biological clogging in two-dimensional sand box experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Designing belowground field experiments with the help of semi-variance and power analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Intrinsic noise, dissipation cost, and robustness of cellular networks: the underlying energy landscape of MAPK signal transduction

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Swimming in circles: motion of bacteria near solid boundaries

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Role of cellulose fibrils and exopolysaccharides of Rhizobium leguminosarum in attachment to and infection of Vicia sativa root hairs.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Ecosystems and the Biosphere as Complex Adaptive Systems

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7 January 2021

Prospects for advancing the understanding of complex biochemical systems

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7 January 2021

The effects of extracellular polymeric substances on the formation and stability of biogranules

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7 January 2021

The potential distribution around growing fractal clusters

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7 January 2021

The effect of cellulose overproduction on binding and biofilm formation on roots by Agrobacterium tumefaciens

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7 January 2021

Self-organization of hydrophobic soil and granular surfaces

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7 January 2021

Bioturbation: a fresh look at Darwin's last idea

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7 January 2021

Bacterial motility: links to the environment and a driving force for microbial physics

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7 January 2021

Analysis of soil whole- and inner-microaggregate bacterial communities

1 reference

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7 January 2021

Rhamnolipid surfactants: an update on the general aspects of these remarkable biomolecules

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7 January 2021

In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Investigating microbial micro-habitat structure using X-ray computed tomography

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Continuity of air-filled pores and invasion thresholds for a soil-borne fungal plant pathogen, Rhizoctonia solani

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Modification of spatial distribution of 2,4-dichlorophenoxyacetic acid degrader microhabitats during growth in soil columns.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Biofilms 2003: emerging themes and challenges in studies of surface-associated microbial life

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Effect of flow regime on the architecture of a Pseudomonas fluorescens biofilm.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

The role played by microorganisms in the biogenesis of soil cracks: importance of substrate quantity and quality

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Biofilm formation in plant-microbe associations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Interactions between soil structure and fungi

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Spatial structure in soil chemical and microbiological properties in an upland grassland

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Attachment of bacteria to the roots of higher plants.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Natural roles of biosurfactants

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Viscoelasticity of Staphylococcus aureus biofilms in response to fluid shear allows resistance to detachment and facilitates rolling migration

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Role of polysaccharides in Pseudomonas aeruginosa biofilm development

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Spatial variation and patterns of soil microbial community structure in a mixed spruce–birch stand

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Moving Waves of Bacterial Populations and Total Organic Carbon along Roots of Wheat

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

THINKING ABOUT BACTERIAL POPULATIONS AS MULTICELLULAR ORGANISMS

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7 January 2021

Analysis of bacterial random motility in a porous medium using magnetic resonance imaging and immunomagnetic labeling

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

The role of hydrodynamic stress on the phenotypic characteristics of single and binary biofilms of Pseudomonas fluorescens

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Meeting the challenge of scaling up processes in the plant–soil–microbe system

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Biofilm exopolysaccharides: a strong and sticky framework

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Exopolysaccharides in biofilms, flocs and related structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Microbial community succession and bacterial diversity in soils during 77,000 years of ecosystem development

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Computational pore network modeling of the influence of biofilm permeability on bioclogging in porous media.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Surface plasmon resonance shows that type IV pili are important in surface attachment by Pseudomonas aeruginosa

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Extracellular polymeric substances responsible for bacterial adhesion onto solid surface

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Biofilm formation and cellulose expression among diverse environmental Pseudomonas isolates

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Microbial production and application of sophorolipids

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Physiological aspects. Part 1 in a series of papers devoted to surfactants in microbiology and biotechnology

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

The porosphere as an ecological medium emphasized in Professor Ghilarov's work on soil animal adaptations

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Distribution of EPS and cell surface hydrophobicity in aerobic granules

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Effects of extracellular polymeric substances on aerobic granulation in sequencing batch reactors

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Bacterial biofilms: prokaryotic adventures in multicellularity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Stratified growth in Pseudomonas aeruginosa biofilms

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Thin aggregative fimbriae and cellulose enhance long-term survival and persistence of Salmonella

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Spatial and resource factors influencing high microbial diversity in soil

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Differential survival of solitary and aggregated bacterial cells promotes aggregate formation on leaf surfaces

1 reference

https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

X-ray tomography of a microhabitat of bacteria and other soil colloids with sub-100 nm resolution

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Protozoan life in a fractal world.

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021

Studies of Freshwater Bacteria: I. A Direct Microscopic Technique

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https://api.crossref.org/works/10.1016%2FS0065-2113%2808%2900604-4

7 January 2021