SAMtools (Q7388648)

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set of software utilities for interacting with and post-processing short DNA sequence read alignments
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Language Label Description Also known as
English
SAMtools
set of software utilities for interacting with and post-processing short DNA sequence read alignments

    Statements

    instance of
    free software
    0 references
    readable file format
    Sequence Alignment/Map
    1 reference
    reference URL
    http://www.htslib.org/doc/#manual-pages
    retrieved
    1 February 2018
    title
    SAMtools Manual pages (English)
    FASTA format
    1 reference
    reference URL
    http://www.htslib.org/doc/#manual-pages
    retrieved
    1 February 2018
    title
    SAMtools Manual pages (English)
    Variant Call Format
    1 reference
    reference URL
    http://www.htslib.org/doc/#manual-pages
    retrieved
    1 February 2018
    title
    SAMtools Manual pages (English)
    programmed in
    C
    1 reference
    stated in
    Open Hub
    reference URL
    https://www.openhub.net/p/samtools/analyses/latest/languages_summary
    title
    The samtools Open Source Project on Open Hub: Languages Page (English)
    retrieved
    19 July 2018
    software version identifier
    1.8
    publication date
    3 April 2018
    1 reference
    title
    Release 1.8 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.8
    publication date
    3 April 2018
    1.7
    publication date
    26 January 2018
    1 reference
    title
    Release 1.7 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.7
    publication date
    26 January 2018
    1.6
    publication date
    28 September 2017
    1 reference
    title
    Release 1.6 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.6
    publication date
    28 September 2017
    1.5
    publication date
    21 June 2017
    1 reference
    title
    Release 1.5 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.5
    publication date
    21 June 2017
    1.4.1
    publication date
    8 May 2017
    1 reference
    title
    Release 1.4.1 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.4.1
    publication date
    8 May 2017
    1.4
    publication date
    13 March 2017
    1 reference
    title
    Release 1.4 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.4
    publication date
    13 March 2017
    1.3.1
    publication date
    22 April 2016
    1 reference
    title
    Release 1.3.1 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.3.1
    publication date
    22 April 2016
    1.3
    publication date
    15 December 2015
    1 reference
    title
    Release 1.3 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.3
    publication date
    15 December 2015
    1.2
    publication date
    4 February 2015
    1 reference
    title
    Release 1.2 (English)
    retrieved
    23 June 2018
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.2
    publication date
    4 February 2015
    1.9
    publication date
    18 July 2018
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.9
    publication date
    18 July 2018
    title
    Release 1.9 (English)
    retrieved
    23 July 2018
    1.10
    publication date
    6 December 2019
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.10
    retrieved
    7 December 2019
    title
    Release 1.10 (English)
    publication date
    6 December 2019
    1.11
    publication date
    22 September 2020
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.11
    retrieved
    16 October 2020
    title
    Release 1.11 (English)
    publication date
    22 September 2020
    1.12
    publication date
    17 March 2021
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.12
    retrieved
    16 April 2021
    title
    Release 1.12 (English)
    publication date
    17 March 2021
    1.13
    publication date
    9 July 2021
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.13
    retrieved
    26 October 2022
    title
    Release 1.13 (English)
    publication date
    9 July 2021
    1.14
    publication date
    22 October 2021
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.14
    retrieved
    26 October 2022
    title
    Release 1.14 (English)
    publication date
    22 October 2021
    1.15
    publication date
    21 February 2022
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.15
    retrieved
    26 October 2022
    title
    Release 1.15 (English)
    publication date
    21 February 2022
    1.15.1
    publication date
    7 April 2022
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.15.1
    retrieved
    26 October 2022
    title
    Release 1.15.1 (English)
    publication date
    7 April 2022
    1.16
    publication date
    18 August 2022
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.16
    retrieved
    26 October 2022
    title
    Release 1.16 (English)
    publication date
    18 August 2022
    1.16.1
    publication date
    2 September 2022
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.16.1
    retrieved
    26 October 2022
    title
    Release 1.16.1 (English)
    publication date
    2 September 2022
    1.17
    publication date
    21 February 2023
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.17
    retrieved
    23 February 2023
    title
    Release 1.17 (English)
    publication date
    21 February 2023
    1.18
    publication date
    25 July 2023
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.18
    retrieved
    1 August 2023
    title
    Release 1.18 (English)
    publication date
    25 July 2023
    1.19
    publication date
    12 December 2023
    version type
    stable version
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.19
    retrieved
    19 December 2023
    title
    Release 1.19 (English)
    publication date
    12 December 2023
    1.19.1
    publication date
    22 January 2024
    version type
    stable version
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.19.1
    retrieved
    20 February 2024
    title
    Release 1.19.1 (English)
    publication date
    22 January 2024
    1.19.2
    publication date
    24 January 2024
    version type
    stable version
    1 reference
    reference URL
    https://github.com/samtools/samtools/releases/tag/1.19.2
    retrieved
    20 February 2024
    title
    Release 1.19.2 (English)
    publication date
    24 January 2024

    Identifiers

    AUR package
    samtools
    0 references
    samtools-git
    0 references
    Freebase ID
    /m/0hzq14h
    0 references
    Open Hub ID
    samtools
    0 references
    openSUSE package
    bcftools
    0 references
     
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