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Wikidata:WikiCite/Bibliographic metadata for scholarly articles in Wikidata

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About[edit]

This page is to develop a proposal for how bibliographic metadata for scholarly articles in Wikidata should be structured. It originated from the PLOS hackathon on October 18, 2014 (impression from the meeting) and is now being developed further as part of WikiProject Source MetaData.

Participants at the hackathon[edit]

  • Jonathan Dugan (PLOS) - @jmdugan
  • Jonas Dupuich (PLOS) - @jdup
  • Mitar (UC Berkeley/PeerLibrary) - @mitar_m
  • Dario Taraborelli (Wikimedia Foundation) - @readermeter
  • Daniel Mietchen (WikiProject Open Access) - @evomri
  • Karen Coyle - @karencoyle


Sample articles[edit]

Examples we're working on

  • James D. Watson and Francis Crick, "Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid", Nature, vol. 171, 4356, , doi: 10.1038/171737A0, PubMed ID: 13054692 , proprietary license
  • Eric N. Rittmeyer, Allen Allison, Michael C. Gründler, Derrick K. Thompson and Christopher C. Austin, "Ecological guild evolution and the discovery of the world's smallest vertebrate", PLOS One, vol. 7, 1, , doi: 10.1371/JOURNAL.PONE.0029797, PubMed ID: 22253785 , PubMed Central ID: 3256195 , Creative Commons Attribution 2.5 Generic
  • Jeffrey T. Williams, Kent E. Carpenter, James L. Van Tassell, Paul Hoetjes, Wes Toller, Peter Etnoyer and Michael L. Smith, "Biodiversity Assessment of the Fishes of Saba Bank Atoll, Netherlands Antilles", PLOS One, vol. 5, 5, , doi: 10.1371/JOURNAL.PONE.0010676, PubMed ID: 20505760 , PubMed Central ID: 2873961 , Creative Commons CC0 License
  • Leonardo Candela, Donatella Castelli and Pasquale Pagano, "Virtual Research Environments: An Overview and a Research Agenda", Data Science Journal, vol. 12, , doi: 10.2481/DSJ.GRDI-013, Creative Commons Attribution 4.0 International
  • Auguste Forel, "Formicides de l'Antille St. Vincent, récoltées par Mons. H. H. Smith", Transactions of the Entomological Society of London, vol. 1893, , doi: 10.5281/ZENODO.14444
  • Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kumar, Jane Lomax, Christopher J. Mungall, Fabian Neuhaus, Alan L Rector and Cornelius Rosse, "Relations in biomedical ontologies", Genome Biology, vol. 6, 5, , doi: 10.1186/GB-2005-6-5-R46, PubMed ID: 15892874 , PubMed Central ID: 1175958 , Creative Commons Attribution 2.0 Generic
  • Ritu Khare, Benjamin M. Good, Robert Leaman, Andrew I. Su and Zhiyong Lu, "Crowdsourcing in biomedicine: challenges and opportunities", Briefings in Bioinformatics, vol. 17, 1, , doi: 10.1093/BIB/BBV021, PubMed ID: 25888696 , PubMed Central ID: 4719068
  • William Fielding Ogburn and Dorothy Swaine Thomas, "Are Inventions Inevitable? A Note on Social Evolution", Political Science Quarterly, vol. 37, 1, , doi: 10.2307/2142320
  • Camille Parmesan and Gary Yohe, "A globally coherent fingerprint of climate change impacts across natural systems", Nature, vol. 421, 6918, , doi: 10.1038/NATURE01286, PubMed ID: 12511946 , proprietary license
  • Alexander Serenko and Nick Bontis, "What’s familiar is excellent: The impact of exposure effect on perceived journal quality and What's familiar is excellent: The impact of exposure effect on perceived journal quality", Journal of Informetrics, vol. 5, 1, , doi: 10.1016/J.JOI.2010.07.005, all rights reserved
  • Oliver H. Lowry, Nira Rosebrough, Lewis Farr and Rose Randall, "Protein measurement with the Folin phenol reagent", Journal of Biological Chemistry, vol. 193, 1, and , doi: 10.1016/S0021-9258(19)52451-6, PubMed ID: 14907713
    • Trying a test cite module:
  • Oliver H. Lowry, Nira Rosebrough, Lewis Farr and Rose Randall, "Protein measurement with the Folin phenol reagent", Journal of Biological Chemistry, 1, vol. 193, and , doi: 10.1016/S0021-9258(19)52451-6, Pub Med ID: 14907713

    • Data model (and mapping it to existing bibliographic data models)[edit]

    Importers[edit]

    Ideas for input[edit]

    RDF and MODS, in contrast to BibTeX and common CSL-Data as used in Zotero, can contain author identifiers instead of raw strings only.

    Contributorship links[edit]

    Wikidata item page[edit]

    See also: Wikidata:WikiProject_Books.

    • Item label: article title
      • label shows up in instant search results; human-readable
    • Item description: "scholarly article by [lastname,firstname] [et al], [year]"
    • aliases

    Statements[edit]

    Yet to clarify which properties should only be used as qualifiers.

    TODO[edit]

    See also[edit]

    • FaBiO, the FRBR-aligned Bibliographic Ontology
    • PRO, the Publishing Roles Ontology

    Examples of metadata in various input formats[edit]

    For discussion about what to import into Wikidata.

    citeproc-json: 

    {u'DOI': u'10.1371/journal.pone.0107541',
u'ISSN': [u'1932-6203'],
u'URL': u'http://dx.doi.org/10.1371/journal.pone.0107541',
u'author': [{u'family': u'Pinto', u'given': u'Jayant M.'},
 {u'family': u'Wroblewski', u'given': u'Kristen E.'},
 {u'family': u'Kern', u'given': u'David W.'},
 {u'family': u'Schumm', u'given': u'L. Philip'},
 {u'family': u'McClintock', u'given': u'Martha K.'}],
u'container-title': u'PLoS ONE',
u'deposited': {u'date-parts': 2014, 10, 1, u'timestamp': 1412121600000},
u'editor': [{u'family': u'Hummel', u'given': u'Thomas'}],
u'indexed': {u'date-parts': 2014, 10, 5, u'timestamp': 1412470290002},
u'issue': u'10',
u'issued': {u'date-parts': 2014, 10, 1},
u'member': u'http://id.crossref.org/member/340',
u'page': u'e107541',
u'prefix': u'http://id.crossref.org/prefix/10.1371',
u'publisher': u'Public Library of Science (PLoS)',
u'reference-count': 0,
u'score': 1.0,
u'source': u'CrossRef',
u'subject': [u'Agricultural and Biological Sciences(all)',
 u'Medicine(all)',
 u'Biochemistry, Genetics and Molecular Biology(all)'],
u'subtitle': [],
u'title': u'Olfactory Dysfunction Predicts 5-Year Mortality in Older Adults',
u'type': u'journal-article',
u'update-policy': u'http://dx.doi.org/10.1371/journal.pone.corrections_policy',
u'volume': u'9'}

    See this GIST for more information

    TODO: Get the same input in BibTex, schema.org+JSON-LD, BibJSON.

    TODO: How to represent corrections (this paper has two corrections)?

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