Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards (Q30972408)

27 June 2017

Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards (English)

1 reference

27 June 2017

1 reference

Todd A Castoe

1

1 reference

PubMed ID

15503673

27 June 2017

Tiffany M Doan

series ordinal

2

1 reference

PubMed ID

15503673

27 June 2017

Christopher L Parkinson

series ordinal

3

1 reference

27 June 2017

1 June 2004

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27 June 2017

1 reference

27 June 2017

53

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27 June 2017

448-469

1 reference

27 June 2017

3

1 reference

A new look at the statistical model identification

27 June 2017

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Model misspecification and probabilistic tests of topology: evidence from empirical data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Comparing bootstrap and posterior probability values in the four-taxon case

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

A new phylogenetic classification for the gymnophthalmid genera Cercosaura, Pantodactylus and Prionodactylus (Reptilia: Squamata)

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Using Morphological and Molecular Evidence to Infer Species Boundaries within Proctoporus bolivianus Werner (Squamata: Gymnophthalmidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Analysis of sequence homogenisation in rDNA arrays ofHaemonchus contortus by denaturing gradient gel electrophoresis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Codon bias variation in C-mos between squamate families might distort phylogenetic inferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Sciurid phylogeny and the paraphyly of Holarctic ground squirrels (Spermophilus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Is the Felsenstein zone a fly trap?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

PHYLOGENY ESTIMATION AND HYPOTHESIS TESTING USING MAXIMUM LIKELIHOOD

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Potential applications and pitfalls of Bayesian inference of phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Modeling nucleotide evolution: a heterogeneous rate analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Dynamically heterogenous partitions and phylogenetic inference: an evaluation of analytical strategies with cytochrome b and ND6 gene sequences in cranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Repeated genes in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Performance-based selection of likelihood models for phylogeny estimation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Bayesian phylogenetic analysis of combined data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Localization of Repeated DNA Sequences in Xenopus Chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Molecular Systematics and Biogeographical History of Pitvipers as Determined by Mitochondrial Ribosomal DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Selecting the Best-Fit Model of Nucleotide Substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Combining multiple data sets in a likelihood analysis: which models are the best?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

A Stochastic Model for the Evolution of Autocorrelated DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Molecular homology assessment and phylogeny in the lizard family opluridae (Squamata: Iguania).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Among-site rate variation and its impact on phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150490445797

Testing a covariotide model of DNA substitution

21 January 2018

1 reference

5 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.MOLBEV.A004128

Identifiers

DOI

10.1080/10635150490445797

1 reference

27 June 2017

1 reference

PubMed ID

15503673