Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles (Q33417945)

26 July 2017

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles (English)

1 reference

26 July 2017

1 reference

molecular phylogenetics

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Emydidae

object named as

emydid

1 reference

Robert C Thomson

2

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H. Bradley Shaffer

series ordinal

4

object named as

H Bradley Shaffer

1 reference

26 July 2017

1

Phillip Q Spinks

1 reference

26 July 2017

Geoff A Lovely

3

1 reference

26 July 2017

12 March 2009

1 reference

26 July 2017

BMC Evolutionary Biology

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26 July 2017

9

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26 July 2017

56

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-56

26 July 2017

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cites work

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Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

21 June 2018

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Delimiting species in recent radiations

21 June 2018

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Delimiting species without monophyletic gene trees

21 June 2018

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21 June 2018

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A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study

21 June 2018

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Deciphering ancient rapid radiations

21 June 2018

1 reference

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Discordance of species trees with their most likely gene trees.

21 June 2018

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How much data are needed to resolve a difficult phylogeny?: case study in Lamiales.

21 June 2018

1 reference

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Molecular phylogenetics and evolution of turtles

21 June 2018

1 reference

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Comprehensive identification and characterization of diallelic insertion-deletion polymorphisms in 330 human candidate genes

21 June 2018

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Phylogenetic hypotheses for the turtle family Geoemydidae

21 June 2018

1 reference

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Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes

21 June 2018

1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

21 June 2018

1 reference

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MrBayes 3: Bayesian phylogenetic inference under mixed models

21 June 2018

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More taxa or more characters revisited: combining data from nuclear protein-encoding genes for phylogenetic analyses of Noctuoidea (Insecta: Lepidoptera).

21 June 2018

1 reference

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Molecular phylogenetics of emydine turtles: taxonomic revision and the evolution of shell kinesis

21 June 2018

1 reference

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Phylogenetic relationships of North American garter snakes (Thamnophis) based on four mitochondrial genes: how much DNA sequence is enough?

21 June 2018

1 reference

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MRBAYES: Bayesian inference of phylogenetic trees

21 June 2018

1 reference

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Mitochondrial genomes of a bandicoot and a brushtail possum confirm the monophyly of australidelphian marsupials

21 June 2018

1 reference

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Hypotheses of aging in a long-lived vertebrate, Blanding's turtle (Emydoidea blandingii).

21 June 2018

1 reference

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MODELTEST: testing the model of DNA substitution

21 June 2018

1 reference

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Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

21 June 2018

1 reference

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Inferring complex phylogenies.

21 June 2018

1 reference

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How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Relationships between gene trees and species trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

31 October 2018

1 reference

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Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome.

31 October 2018

1 reference

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Turtle phylogeny: insights from a novel nuclear intron

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Is it better to add taxa or characters to a difficult phylogenetic problem?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Resolution of phylogenetic relationships among recently evolved species as a function of amount of DNA sequence: an empirical study based on woodpeckers (Aves: Picidae).

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes.

31 October 2018

1 reference

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Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Explaining Species Richness from Continents to Communities: The Time‐for‐Speciation Effect in Emydid Turtles

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2660309

Ribosomal DNA and resolution of branching order among the ascomycota: how many nucleotides are enough?

31 October 2018

1 reference

12 December 2020

More characters or more taxa for a robust phylogeny--case study from the coffee family (Rubiaceae)

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Temperature-dependent sex determination in turtles

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-9-56

1 reference

PubMed ID

19284630

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-9-56

9 September 2019

1 reference

26 July 2017

1 reference

PubMed ID

19284630