The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference (Q33595529)

28 July 2017

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference (English)

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28 July 2017

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Jeremy M Brown

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Kathrin F. Stanger-Hall

object named as

Kathrin Stanger-Hall

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3

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Emily Moriarty Lemmon

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4

object named as

Emily Moriarty Lemmon

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28 July 2017

1

Alan R Lemmon

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28 July 2017

1 February 2009

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28 July 2017

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28 July 2017

58

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28 July 2017

1

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28 July 2017

130-145

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Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

28 July 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Predicting the evolution of human influenza A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Comparing bootstrap and posterior probability values in the four-taxon case

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

The supermatrix approach to systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Prospects for building the tree of life from large sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Molecular phylogenetics of myliobatiform fishes (Chondrichthyes: Myliobatiformes), with comments on the effects of missing data on parsimony and likelihood.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Phylogenies from molecular sequences: inference and reliability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

MaxAlign: maximizing usable data in an alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

21 January 2018

AIDS. Origins of HIV.

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Experimental Phylogenetics: Generation of a Known Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Is there a star tree paradox?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Polytomies and Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Phylogenetic mixtures on a single tree can mimic a tree of another topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Molecular phylogenetics and the origins of placental mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Phylogenomics of eukaryotes: impact of missing data on large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Heterotachy and long-branch attraction in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Phylogeny of North American fireflies (Coleoptera: Lampyridae): implications for the evolution of light signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Should phylogenetic models be trying to "fit an elephant"?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

The Bayesian "star paradox" persists for long finite sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Does adding characters with missing data increase or decrease phylogenetic accuracy?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Missing data, incomplete taxa, and phylogenetic accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Missing data and the design of phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Fair-balance paradox, star-tree paradox, and Bayesian phylogenetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Branch-length prior influences Bayesian posterior probability of phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

The Biasing Effect of Compositional Heterogeneity on Phylogenetic Estimates May be Underestimated

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP017

Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites

21 January 2018

1 reference

12 December 2020

Heterotachy and tree building: a case study with plastids and eubacteria.

1 reference

12 December 2020

Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation

1 reference

12 December 2020

Likelihood, parsimony, and heterogeneous evolution

1 reference

12 December 2020

EXPERIMENTAL MOLECULAR EVOLUTION OF BACTERIOPHAGE T7.

1 reference

12 December 2020

Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees.

1 reference

12 December 2020

A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates

1 reference

12 December 2020

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees

1 reference

12 December 2020

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

1 reference

12 December 2020

Phylogeny of the SARS coronavirus.

1 reference

12 December 2020

Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents.

1 reference

12 December 2020

Identifiers

DOI

10.1093/SYSBIO/SYP017

1 reference

28 July 2017

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1 reference

PubMed ID

20525573