Addressing challenges in the production and analysis of illumina sequencing data (Q33975605)

30 July 2017

Addressing challenges in the production and analysis of illumina sequencing data (English)

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30 July 2017

1

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30 July 2017

3

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30 July 2017

Patricia Heyn

2

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PubMed ID

21801405

30 July 2017

language of work or name

English

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publication date

29 July 2011

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30 July 2017

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30 July 2017

12

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30 July 2017

382

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https://scigraph.springernature.com/pub.10.1186/1471-2164-12-382

30 July 2017

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5 July 2018

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5 July 2018

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Illumina sequencing library preparation for highly multiplexed target capture and sequencing

5 July 2018

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5 July 2018

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Targeted investigation of the Neandertal genome by array-based sequence capture

5 July 2018

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A Draft Sequence of the Neandertal Genome

5 July 2018

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

5 July 2018

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Target-enrichment strategies for next-generation sequencing

5 July 2018

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A complete mtDNA genome of an early modern human from Kostenki, Russia

5 July 2018

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Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.

5 July 2018

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Sequencing technologies - the next generation

5 July 2018

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

5 July 2018

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TagDust--a program to eliminate artifacts from next generation sequencing data

5 July 2018

1 reference

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Improved base calling for the Illumina Genome Analyzer using machine learning strategies

5 July 2018

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The Neandertal genome and ancient DNA authenticity

5 July 2018

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BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing

5 July 2018

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Swift: primary data analysis for the Illumina Solexa sequencing platform.

5 July 2018

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The Sequence Alignment/Map format and SAMtools

5 July 2018

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SOAP2: an improved ultrafast tool for short read alignment

5 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

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Next-generation DNA sequencing techniques

5 July 2018

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SNP detection for massively parallel whole-genome resequencing

5 July 2018

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Massively parallel exon capture and library-free resequencing across 16 genomes

5 July 2018

1 reference

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Expression profiling of microRNAs by deep sequencing

5 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

5 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

A large genome center's improvements to the Illumina sequencing system

5 July 2018

1 reference

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Accurate whole human genome sequencing using reversible terminator chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

Probabilistic base calling of Solexa sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

Next-generation DNA sequencing methods

5 July 2018

1 reference

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TileQC: a system for tile-based quality control of Solexa data

5 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

1 reference

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Next-generation sequencing transforms today's biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

Multiplex amplification of large sets of human exons

5 July 2018

1 reference

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BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies.

5 July 2018

1 reference

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Solid-phase reversible immobilization for the isolation of PCR products

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

Template-switching during DNA synthesis by Thermus aquaticus DNA polymerase I.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

DNA damage promotes jumping between templates during enzymatic amplification.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

DNA recombination during PCR.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

De novo fragment assembly with short mate-paired reads: Does the read length matter?

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-12-382

Reducing the impact of PCR-mediated recombination in molecular evolution and environmental studies using a new-generation high-fidelity DNA polymerase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163567

29 October 2018

Identifiers

DOI

10.1186/1471-2164-12-382

1 reference

PubMed ID

21801405

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-382

9 September 2019

1 reference

30 July 2017

1 reference

PubMed ID

21801405