Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species (Q43513801)

24 November 2017

Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species (English)

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24 November 2017

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3

Susanne S Renner

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24 November 2017

Mathieu Piednoël

1

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PubMed ID

23663083

24 November 2017

Greta Carrete-Vega

series ordinal

2

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24 November 2017

3 June 2013

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24 November 2017

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24 November 2017

75

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24 November 2017

4

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24 November 2017

699-709

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The alternative splicing factor PSI regulates P-element third intron splicing in vivo

24 November 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

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The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race

21 January 2018

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

21 January 2018

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Mechanisms and rates of genome expansion and contraction in flowering plants.

21 January 2018

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DNA methylation patterns and epigenetic memory

21 January 2018

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

21 January 2018

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Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

21 January 2018

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BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

21 January 2018

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Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns

21 January 2018

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Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

21 January 2018

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The diversity of retrotransposons and the properties of their reverse transcriptases

21 January 2018

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The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

21 January 2018

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Evolvability, epigenetics and transposable elements

21 January 2018

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Chromodomains direct integration of retrotransposons to heterochromatin.

21 January 2018

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A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes

21 January 2018

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Evolutionary genomics of chromoviruses in eukaryotes

21 January 2018

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The transposable element landscape of the model legume Lotus japonicus

21 January 2018

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Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

21 January 2018

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Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

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Families of transposable elements, population structure and the origin of species

21 January 2018

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Multiple alignment of DNA sequences with MAFFT

21 January 2018

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A genomic perspective on the chromodomain-containing retrotransposons: Chromoviruses

21 January 2018

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Genome sizes through the ages.

21 January 2018

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Epigenetic phenomena and the evolution of plant allopolyploids

21 January 2018

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Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

21 January 2018

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The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

21 January 2018

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Autoregulation of mariner transposase activity by overproduction and dominant-negative complementation.

21 January 2018

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The cotton centromere contains a Ty3-gypsy-like LTR retroelement

21 January 2018

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Phenotypic impacts of repetitive DNA in flowering plants

21 January 2018

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TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.

21 January 2018

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Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

21 January 2018

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Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

21 January 2018

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Evolutionary history of LTR retrotransposon chromodomains in plants

21 January 2018

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Transposable elements: powerful facilitators of evolution

21 January 2018

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Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

21 January 2018

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An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila

21 January 2018

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Impact of transposable elements on the organization and function of allopolyploid genomes

21 January 2018

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The largest eukaryotic genome of them all?

21 January 2018

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TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 January 2018

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Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

21 January 2018

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Evidence for a piwi-dependent RNA silencing of the gypsy endogenous retrovirus by the Drosophila melanogaster flamenco gene

21 January 2018

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A movable feast: diverse retrotransposons and their contribution to barley genome dynamics

21 January 2018

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Transposase titration in Drosophila melanogaster: a model of cytotype in the P-M system of hybrid dysgenesis

21 January 2018

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Transposable elements and the epigenetic regulation of the genome

21 January 2018

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The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements.

21 January 2018

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

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A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize.

21 January 2018

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The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

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Chromatin remodeling in plants

21 January 2018

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Evolution of genome size in Drosophila. is the invader's genome being invaded by transposable elements?

21 January 2018

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Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus

21 January 2018

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LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

21 January 2018

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Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

21 January 2018

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A unified classification system for eukaryotic transposable elements

21 January 2018

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Transposable elements and an epigenetic basis for punctuated equilibria

21 January 2018

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Genome downsizing in polyploid plants

21 January 2018

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Genome Size in Diploids, Allopolyploids, and Autopolyploids of Mediterranean Triticeae

21 January 2018

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Genome Size Is a Strong Predictor of Root Meristem Growth Rate

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/TPJ.12233

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24 November 2017

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PubMed ID

23663083