A phylogenomic approach to resolve the basal pterygote divergence (Q43820068)

27 November 2017

A phylogenomic approach to resolve the basal pterygote divergence (English)

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27 November 2017

1 reference

Sabrina Simon

1

1 reference

27 November 2017

Sascha Strauss

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2

1 reference

27 November 2017

Arndt von Haeseler

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3

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27 November 2017

Heike Hadrys

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4

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27 November 2017

27 August 2009

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Molecular Biology and Evolution

27 November 2017

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27 November 2017

26

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27 November 2017

12

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27 November 2017

2719-2730

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ProtTest: selection of best-fit models of protein evolution

27 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Multilocus phylogenetics of a rapid radiation in the genus Thomomys (Rodentia: Geomyidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

21 January 2018

GeneWise and Genomewise

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

DNA sequence quality trimming and vector removal.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Supertrees join the mainstream of phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

HaMStR: profile hidden markov model based search for orthologs in ESTs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

High-resolution species trees without concatenation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

New light shed on the oldest insect

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Statistical tests of models of DNA substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Is sparse taxon sampling a problem for phylogenetic inference?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Dense taxonomic EST sampling and its applications for molecular systematics of the Coleoptera (beetles).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Aligned 18S and insect phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Towards an 18S phylogeny of hexapods: accounting for group-specific character covariance in optimized mixed nucleotide/doublet models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Phylogenomics of eukaryotes: impact of missing data on large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

EST sequencing of Onychophora and phylogenomic analysis of Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Conflicting phylogenetic signals at the base of the metazoan tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Expressed sequence tags: alternative or complement to whole genome sequences?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

CONSEL: for assessing the confidence of phylogenetic tree selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Should phylogenetic models be trying to "fit an elephant"?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Maximum likelihood supertrees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Ancient rapid radiations of insects: challenges for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Properties of supertree methods in the consensus setting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

The homology of wing base sclerites and flight muscles in Ephemeroptera and Neoptera and the morphology of the pterothorax of Habroleptoides confusa (Insecta: Ephemeroptera: Leptophlebiidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Aligned 18S for Zoraptera (Insecta): phylogenetic position and molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

Increased taxon sampling greatly reduces phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

The Palaeoptera Problem: Basal Pterygote Phylogeny Inferred from 18S and 28S rDNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSP191

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSP191

1 reference

27 November 2017

1 reference