Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships (Q44279794)

1 December 2017

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships (English)

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1 December 2017

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Jeffrey P Townsend

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1 December 2017

Francesc Lopez-Giraldez

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2

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1 December 2017

19 May 2010

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1 December 2017

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1 December 2017

59

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4

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1 December 2017

446-457

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Assessing the performance of single-copy genes for recovering robust phylogenies.

1 December 2017

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

A kingdom-level phylogeny of eukaryotes based on combined protein data

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Comparing bootstrap and posterior probability values in the four-taxon case

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Reconstructing/deconstructing the earliest eukaryotes: how comparative genomics can help

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Sequence length bounds for resolving a deep phylogenetic divergence.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Success of maximum likelihood phylogeny inference in the four-taxon case

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Experimental design criteria in phylogenetics: where to add taxa

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Phylogenetic information and experimental design in molecular systematics.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Is it better to add taxa or characters to a difficult phylogenetic problem?

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Resolution of phylogenetic conflict in large data sets by increased taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

A higher-level phylogenetic classification of the Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Reconstructing the early evolution of Fungi using a six-gene phylogeny

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Large-scale phylogenies and measuring the performance of phylogenetic estimators

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

FUNYBASE: a FUNgal phYlogenomic dataBASE

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Site-Specific Evolutionary Rate Inference: Taking Phylogenetic Uncertainty into Account

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Evolution of the genetic code in yeasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Phylogenetic Noise Leads to Unbalanced Cladistic Tree Reconstructions

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Sensitivity of phylogeny estimation to taxonomic sampling

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Increased taxon sampling is advantageous for phylogenetic inference

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

MrBayes 3: Bayesian phylogenetic inference under mixed models

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Incomplete taxon sampling is not a problem for phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Taxon sampling, bioinformatics, and phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

Increased taxon sampling greatly reduces phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYQ025

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYQ025

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1 December 2017

1 reference

PubMed ID

20547780