Retrieving a mitogenomic mammal tree using composite taxa (Q44411067)

2 December 2017

Retrieving a mitogenomic mammal tree using composite taxa (English)

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2 December 2017

Véronique Campbell

1

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PubMed ID

21134474

2 December 2017

François-Joseph Lapointe

series ordinal

2

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2 December 2017

4 December 2010

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Molecular Phylogenetics and Evolution

2 December 2017

8

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based on heuristic

inferred from page(s)

published in

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2 December 2017

58

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2 December 2017

149-156

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2 December 2017

2

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Mitogenomic relationships of placental mammals and molecular estimates of their divergences

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A review of long-branch attraction

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Assessment of the accuracy of matrix representation with parsimony analysis supertree construction

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Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom

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The use and validity of composite taxa in phylogenetic analysis

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Evolution. Genomic databases and the tree of life

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Tunicates and not cephalochordates are the closest living relatives of vertebrates

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Prospects for building the tree of life from large sequence databases

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Broad phylogenomic sampling improves resolution of the animal tree of life

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Amniote Phylogeny and the Importance of Fossils

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Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus

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MRBAYES: Bayesian inference of phylogenetic trees

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Rates of genome evolution and branching order from whole genome analysis

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Phylogenomics: the beginning of incongruence?

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Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions

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Site specific rates of mitochondrial genomes and the phylogeny of eutheria

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A new method for calculating evolutionary substitution rates

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ASSESSING CONGRUENCEAMONG DISTANCE MATRICES: SINGLE-MALT SCOTCH WHISKIES REVISITED

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Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling

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Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires.

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Parallel adaptive radiations in two major clades of placental mammals

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The misleading effects of composite taxa in supermatrices

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Phylogenetic systematics of the colorful, cyanide-producing millipedes of Appalachia (Polydesmida, Xystodesmidae, Apheloriini) using a total evidence Bayesian approach

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Suprafamilial relationships among Rodentia and the phylogenetic effect of removing fast-evolving nucleotides in mitochondrial, exon and intron fragments

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Molecular phylogenetics and the origins of placental mammals

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Rooting the eutherian tree: the power and pitfalls of phylogenomics

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APE: Analyses of Phylogenetics and Evolution in R language

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The platypus put in its place

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Acoel flatworms are not platyhelminthes: evidence from phylogenomics

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Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

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Phylogenomics of eukaryotes: impact of missing data on large alignments

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Combined mitochondrial and nuclear DNA sequences resolve the interrelations of the major Australasian marsupial radiations

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MODELTEST: testing the model of DNA substitution

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Arrival and diversification of caviomorph rodents and platyrrhine primates in South America

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Confirming the phylogeny of mammals by use of large comparative sequence data sets

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Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference

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Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian Methods

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The general stochastic model of nucleotide substitution

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Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

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Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

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EST sequencing of Onychophora and phylogenomic analysis of Metazoa

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More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

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1 reference

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Genome-scale approaches to resolving incongruence in molecular phylogenies

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The challenge of constructing large phylogenetic trees

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The complete mitochondrial sequence of Tarsius bancanus: evidence for an extensive nucleotide compositional plasticity of primate mitochondrial DNA.

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Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data

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The use of composite taxa in supermatrices

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Molecules consolidate the placental mammal tree

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Using novel phylogenetic methods to evaluate mammalian mtDNA, including amino acid-invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the positions of hedgehog, armadillo, and elephant

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1 reference

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Does adding characters with missing data increase or decrease phylogenetic accuracy?

7 January 2021

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Missing data, incomplete taxa, and phylogenetic accuracy

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Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?

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Missing data and the design of phylogenetic analyses

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Hylid frog phylogeny and sampling strategies for speciose clades

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10.1016/J.YMPEV.2010.11.017

7 January 2021

Identifiers

DOI

1 reference

2 December 2017

1 reference

PubMed ID

21134474