Why size really matters when sequencing plant genomes (Q57067604)

Ilia J. Leitch

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Andrew R. Leitch

Andrew R. Leitch

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Michael F. Fay

Michael F. Fay

3

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Laura J. Kelly

1

Laura J. Kelly

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author name string

Simon Renny-Byfield

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Jiří Macas

Plant Ecology and Diversity

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publication date

December 2012

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published in

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volume

5

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issue

4

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page(s)

415-425

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cites work

Limitations of next-generation genome sequence assembly

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

De novo genome assembly: what every biologist should know

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Plantagora: modeling whole genome sequencing and assembly of plant genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome Size Evolution in Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Nuclear DNA amounts in angiosperms: progress, problems and prospects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative est

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Nuclear DNA amounts in angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Reference genome sequence of the model plant Setaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genomics. Genome project standards in a new era of sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The genome of the extremophile crucifer Thellungiella parvula

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The rest of the iceberg. Legume diversity and evolution in a phylogenetic context

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Assemblathon 1: a competitive assessment of de novo short read assembly methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

DNA transposons and the evolution of eukaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Crop genome sequencing: lessons and rationales

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

History and Concepts of Big Plant Genera

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Field guide to next-generation DNA sequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Synergy between sequence and size in Large-scale genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Smallest angiosperm genomes found in lentibulariaceae, with chromosomes of bacterial size

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Intraspecific variation in genome size in angiosperms: identifying its existence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The genome of the cucumber, Cucumis sativus L

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Sequencing crop genomes: approaches and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Ancestral polyploidy in seed plants and angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Exploring giant plant genomes with next-generation sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Chromosome evolution in the genus Ophioglossum L

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome-wide patterns of genetic variation among elite maize inbred lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Exploring plant biodiversity: the Physcomitrella genome and beyond.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome Size Dynamics and Evolution in Monocots

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome size diversity in orchids: consequences and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Evolution of DNA amounts across land plants (embryophyta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The dynamic ups and downs of genome size evolution in Brassicaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Forest tree genomics: growing resources and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome structures and halophyte-specific gene expression of the extremophile Thellungiella parvula in comparison with Thellungiella salsuginea (Thellungiella halophila) and Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Evolutionary consequences of autopolyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Insights from the comparison of plant genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The largest eukaryotic genome of them all?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Plant biology. Green genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

GAGE: A critical evaluation of genome assemblies and assembly algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome structure of the legume, Lotus japonicus

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

A window into third-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Assembly of large genomes using second-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome sequence of the palaeopolyploid soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Efficient de novo assembly of large genomes using compressed data structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The Amborella genome: an evolutionary reference for plant biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Angiosperm phylogeny: 17 genes, 640 taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Genome sequence and analysis of the tuber crop potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The tomato genome sequence provides insights into fleshy fruit evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

The 1001 genomes project for Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Patching gaps in plant genomes results in gene movement and erosion of colinearity

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Validation of rice genome sequence by optical mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

A single molecule scaffold for the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Recent Insights into Mechanisms of Genome Size Change in Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868

Heavy Metal Pollution, Selection, and Genome Size: The Species of the Žerjav Study Revisited with Flow Cytometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F17550874.2012.716868