Wikidata:Property proposal/Bioconductor project
Bioconductor project[edit]
Originally proposed at Wikidata:Property proposal/Natural science
| Description | name for a software project hosted on the Bioconductor website |
|---|---|
| Represents | Bioconductor project (Q112607797) |
| Data type | External identifier |
| Domain | R package (Q73539779) |
| Allowed values | string |
| Example 1 | limma (Q112236343) → limma |
| Example 2 | ontoProc: processing of ontologies of anatomy, cell lines, and so on (Q101074371) → ontoProc |
| Example 3 | Scater (Q103815779) → Scater |
| Example 4 | biomaRt (Q109500237) → biomaRt |
| Example 5 | edgeR package (Q112236367) → edgeR |
| Example 6 | HilbertCurve (Q109500261) → HilbertCurve |
| Example 7 | Single-cell RNAseq cell cluster labelling by reference (celaref) (Q104552099) → celaref |
| External links | Use in sister projects: [ar] • [de] • [en] • [es] • [fr] • [he] • [it] • [ja] • [ko] • [nl] • [pl] • [pt] • [ru] • [sv] • [vi] • [zh] • [commons] • [species] • [wd] • [en.wikt] • [fr.wikt]. |
| Number of IDs in source | 2140 (in Bioconductor release 3.15) |
| Expected completeness | always incomplete (Q21873886) |
| Formatter URL | https://bioconductor.org/packages/release/bioc/html/$1.html |
| Robot and gadget jobs | Nothing concretely planned, but probably Mix'n'Match |
| See also | CRAN project (P5565) |
| Applicable "stated in"-value | Bioconductor (Q2888953) |
| Single-value constraint | yes |
| Distinct-values constraint | yes |
| Wikidata project | WikiProject Computer Science (Q6526225) |
Motivation[edit]
This is modeled after CRAN project (P5565) 
, with the main difference being that Bioconductor assigns DOIs — i.e. DOI (P356) — to its entries, so a dedicated property for Bioconductor packages may not be strictly necessary but given the large number of items that have DOIs and are not Bioconductor packages, it would be more convenient for curation, exploration and maintenance. Of note, Bioconductor discourages double hosting, so for any point in time (or for any release), there is no or nearly no overlap to packages hosted on CRAN. Daniel Mietchen (talk) 01:50, 17 June 2022 (UTC)
WikiProject Informatics has more than 50 participants and couldn't be pinged. Please post on the WikiProject's talk page instead. --Daniel Mietchen (talk) 16:05, 6 July 2022 (UTC)
Discussion[edit]
Support --Egon Willighagen (talk) 05:30, 17 June 2022 (UTC)
Support Bioconductor is extremely important for the life sciences, good to have it linked to Wikidata in a better, standardized way. TiagoLubiana (talk) 12:03, 21 June 2022 (UTC)
Support - Jvcavv (talk) 13:05, 24 June 2022 (UTC)
Support This is an identifier of use to meta:WikiCite and Wikidata:WikiProject Source Metadata. The application is that the bioconductor registry connects resources to academic publications. Getting this data into Wikidata amplifies the value of the WikiCite corpus. This property proposal is for an identifier, so is routine and low risk for causing problems. Bluerasberry (talk) 16:15, 27 June 2022 (UTC)
Done Germartin1 (talk) 11:01, 29 July 2022 (UTC)
