Reactome Pathway (E39)
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language code | label | description | aliases | edit |
---|---|---|---|---|
en | Reactome Pathway | schema of a reactome pathway in wikidata | edit | |
fr | voie métabolique | edit | ||
it | percorso biologico Reactome | schema per descrivere un percorso biologico (con identificatore Reactome) | edit | |
ja | Reactomeのパスウェイ | WikidataにおけるReactomeパスウェイを記述するためのスキーマ | edit | |
pl | ścieżka metaboliczna | schemat dla ścieżki metabolicznej | edit |
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX pq: <http://www.wikidata.org/prop/qualifier/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX wdref: <http://www.wikidata.org/reference/>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wikibase: <http://wikiba.se/ontology#>
PREFIX schema: <http://schema.org/>
PREFIX po: <http://purl.obolibrary.org/obo/PW>
PREFIX go: <http://purl.obolibrary.org/obo/GO>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
# SELECT * WHERE {?reactome wdt:P3937 ?reactID .} LIMIT 10
start=@<#wikidata-reactome-pathway>
<#wikidata-reactome-pathway> EXTRA p:P31 {
# Statements
p:P31 (@<react_P31-pathway-term> OR # biological pathway
@<P31-gene-ontology-term>)+ ; # go term if present
p:P361 @<react_P361-part-of>* ; # part of
p:P527 @<react_P527-has-part>* ; # has part
p:P2860 @<react_P2860-wikicite>* ; # cites
p:P703 @<react_P703-found-in-taxon> ; # species
# Identifiers
p:P3937 @<react_P3937-reactome-identifier> ;
}
<react_P31-pathway-term> { # always uses this pathway ontology term
ps:P31 @<react_pathway> ;
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_pathway>
[
wd:Q4915012 # biological pathway
]
<P31-gene-ontology-term> { #
ps:P31 @<react_go-term> ;
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_go-term> {
p:P31 {
ps:P31 [
wd:Q2996394 # biological process
]
}
}
<react_P361-part-of> {
ps:P361 {
p:P3937 @<react_P3937-reactome-identifier>
} ;
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_P527-has-part> {
ps:P527 {
p:P3937 @<react_P3937-reactome-identifier>
} ; # need to add or reaction
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_protein> {
p:P31 {
ps:P31 [wd:Q8054] ;
}
}
<react_P2860-wikicite> {
ps:P2860 @<react_pubmed-entry> ;
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_pubmed-entry> {
p:P698 {
ps:P698 LITERAL /[0-9]+/ ;
}
}
<react_P703-found-in-taxon> {
ps:P703 @<react_reactome-taxons> ;
prov:wasDerivedFrom @<react_reactome-reference> ;
}
<react_reactome-taxons> [
wd:Q15978631 # Homo sapiens
]
<react_P3937-reactome-identifier> {
ps:P3937 LITERAL /R-[A-Z]{3}-[0-9]+/ ;
# prov:wasDerivedFrom @<reactome-reference>
}
<react_reactome-reference> {
# Reference to Reactome item in Wikidata
pr:P248 [ wd:Q2134522 ] ;
pr:P813 xsd:dateTime ;
pr:P3937 LITERAL /R-[A-Z]{3}-[0-9]+/ ;
}