WikiPathways: connecting communities (Q102205677)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

22 November 2020

title

WikiPathways: connecting communities (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

22 November 2020

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5

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

22 November 2020

1

Marvin Martens

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Ammar Ammar

2

Ammar Ammar

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Anders Riutta

3

Anders Riutta

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Andra Waagmeester

4

Andra Waagmeester

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Kristina Hanspers

6

Kristina Hanspers

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Ryan Miller

7

Ryan A Miller

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Friederike Ehrhart

Friederike Ehrhart

10

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Lauren J Dupuis

11

Lauren J Dupuis

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Laurent Winckers

12

Laurent A Winckers

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Susan Coort

13

Susan L Coort

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Egon Willighagen

14

Egon L Willighagen

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Chris T. Evelo

15

Chris T Evelo

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Alexander R. Pico

Alexander R Pico

16

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Martina Summer-Kutmon

17

Martina Kutmon

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Daniela Digles

8

Daniela Digles

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

22 November 2020

9

Elisson N Lopes

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

full work available at URL

22 November 2020

publication date

8 January 2021

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number of pages

8

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https://academic.oup.com/nar/article/49/D1/D613/5992285

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published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

22 November 2020

volume

49

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page(s)

D613–D621

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issue

D1

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copyright license

start time

19 November 2020

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

WikiPathways: pathway editing for the people

The FAIR Guiding Principles for scientific data management and stewardship

1

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WikiPathways: building research communities on biological pathways

2

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WikiPathways: capturing the full diversity of pathway knowledge

3

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Reactome from a WikiPathways Perspective

4

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Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

5

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WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

6

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COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

7

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LIPID MAPS: Serving the next generation of lipid researchers with tools, resources, data, and training

8

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Integrated breast cancer pathway

9

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10

NetPath: a public resource of curated signal transduction pathways

wikipathways.org/instance/WP1984_r110683

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Newt: a comprehensive web-based tool for viewing, constructing, and analyzing biological maps

12

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Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database

16

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Physician's Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases

20

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Knowledge base and mini-expert platform for the diagnosis of inborn errors of metabolism

21

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Characterization of HSCD5, a novel human stearoyl-CoA desaturase unique to primates

22

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Adverse outcome pathways: a conceptual framework to support ecotoxicology research and risk assessment

23

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Introducing WikiPathways as a Data-Source to Support Adverse Outcome Pathways for Regulatory Risk Assessment of Chemicals and Nanomaterials

24

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Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

25

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The IUPHAR/BPS Guide to PHARMACOLOGY in 2020: extending immunopharmacology content and introducing the IUPHAR/MMV Guide to MALARIA PHARMACOLOGY

27

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The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

28

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The neXtProt knowledgebase in 2020: data, tools and usability improvements

29

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Wikidata as a knowledge graph for the life sciences

30

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Scholia, Scientometrics and Wikidata

32

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Robustifying Scholia: paving the way for knowledge discovery and research assessment through Wikidata

33

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Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

34

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35

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Europe PMC in 2017.

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

38

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clusterProfiler: an R package for comparing biological themes among gene clusters.

39

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Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods

40

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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

41

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Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

42

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WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

43

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A description of the Molecular Signatures Database (MSigDB) Web site

44

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

45

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MINERVA API and plugins: opening molecular network analysis and visualization to the community

46

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PyBEL: a Computational Framework for Biological Expression Language

47

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PathMe: merging and exploring mechanistic pathway knowledge

48

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ComPath: an ecosystem for exploring, analyzing, and curating mappings across pathway databases

50

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The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

51

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smartAPI: Towards a More Intelligent Network of Web APIs

52

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NDEx: A Community Resource for Sharing and Publishing of Biological Networks

55

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Integration of Structured Biological Data Sources using Biological Expression Language

53

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1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

Wikidata: A New Platform for Collaborative Data Collection

18 October 2021

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

Identifying Genes in Published Pathway Figure Images

18 October 2021

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

PathVisio 3: an extendable pathway analysis toolbox

18 October 2021

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

The Biomedical Data Translator Program: Conception, Culture, and Community

18 October 2021

1 reference

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

A protocol for adding knowledge to Wikidata, a case report

18 October 2021

2 references

https://opencitations.net/index/coci/api/v1/citations/10.1101/2020.04.05.026336

27 January 2023

https://opencitations.net/index/coci/api/v1/references/10.1093/NAR/GKAA1024

Pathway information extracted from 25 years of pathway figures

27 January 2023

1 reference

https://opencitations.net/index/api/v1/references/10.1093/NAR/GKAA1024

Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms

13 January 2024

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1038/S41597-020-00589-W

Identifiers

DOI

10.1093/NAR/GKAA1024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:33211851%20AND%20SRC:MED&resulttype=core&format=json

22 November 2020

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