Plant-symbiotic fungi as chemical engineers: multi-genome analysis of the clavicipitaceae reveals dynamics of alkaloid loci (Q21090203)

7 August 2022

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Nikki D Charlton

Nikki D

Charlton

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Randy D Dinkins

Randy D

Dinkins

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Jan Schmid

Jan

Schmid

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Carolyn A Young

Carolyn A

Young

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Donal M O'Sullivan

Donal M

O'Sullivan

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7 August 2022

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Murray Cox

Murray

Cox

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Christopher Lewis Schardl

7 August 2022

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object named as

Christopher L Schardl

Christopher L

Schardl

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Chunjie Li

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Chunjie

Li

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Uljana Hesse

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Uljana

Hesse

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Anthony E Glenn

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Anthony E

Glenn

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Eiji Tanaka

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Eiji

Tanaka

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Christine R Voisey

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Voisey

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Richard D Johnson

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Richard D

Johnson

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Zhiqiang An

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Zhiqiang

An

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22 September 2022

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Barry

Scott

Barry Scott

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Adrian

Leuchtmann

Adrian Leuchtmann

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Stefan G Amyotte

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Stefan G

Amyotte

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Kalina Andreeva

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Kalina

Andreeva

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Patrick J Calie

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Patrick J

Calie

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Damien J Fleetwood

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Damien J

Fleetwood

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David C Haws

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David C

Haws

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Neil Moore

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Neil

Moore

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Birgitt Oeser

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Birgitt

Oeser

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Daniel G Panaccione

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Daniel G

Panaccione

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Kathryn K

Schweri

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Mark L Farman

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Mark L

Farman

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Jerzy W Jaromczyk

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Jerzy W

Jaromczyk

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Bruce A Roe

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Bruce A

Roe

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Paul Tudzynski

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Paul

Tudzynski

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7 August 2022

Elissaveta G Arnaoudova

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Elissaveta G

Arnaoudova

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7 August 2022

Charles T Bullock

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Charles T

Bullock

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Li Chen

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Li

Chen

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7 August 2022

Simona Florea

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Simona

Florea

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Anna Gordon

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Anna

Gordon

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Daniel R Harris

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Daniel R

Harris

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Walter Hollin

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Walter

Hollin

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Jolanta Jaromczyk

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Jolanta

Jaromczyk

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Anar K Khan

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Anar K

Khan

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Eckhard Leistner

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Eckhard

Leistner

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JinGe Liu

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JinGe

Liu

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Jinze Liu

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Jinze

Liu

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Miao Liu

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Miao

Liu

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Wade Mace

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Wade

Mace

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Caroline Machado

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Caroline

Machado

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Padmaja Nagabhyru

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Padmaja

Nagabhyru

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Juan Pan

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Juan

Pan

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Koya Sugawara

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Koya

Sugawara

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Ulrike Steiner

48

Ulrike

Steiner

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Johanna E Takach

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Johanna E

Takach

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Jennifer S Webb

51

Jennifer S

Webb

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Ella V Wilson

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Ella V

Wilson

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Jennifer L Wiseman

53

Jennifer L

Wiseman

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Ruriko Yoshida

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Ruriko

Yoshida

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Zheng Zeng

55

Zheng

Zeng

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Creative Commons CC0 License

7 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

PLOS Genetics

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volume

9

0 references

issue

2

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page(s)

e1003323

0 references

copyright license

start time

28 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

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19 March 2017

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A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): identification of localized incongruence using a combinational bootstrap approach

19 March 2017

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Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes

19 March 2017

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Loline alkaloids: Currencies of mutualism

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A complex gene cluster for indole-diterpene biosynthesis in the grass endophyte Neotyphodium lolii

19 March 2017

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A symbiosis expressed non-ribosomal peptide synthetase from a mutualistic fungal endophyte of perennial ryegrass confers protection to the symbiotum from insect herbivory

19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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Ab initio gene finding in Drosophila genomic DNA

7 April 2017

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Accuracy and quality of massively parallel DNA pyrosequencing

7 April 2017

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Abundant degenerate miniature inverted-repeat transposable elements in genomes of epichloid fungal endophytes of grasses

7 April 2017

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Periglandula, a new fungal genus within the Clavicipitaceae and its association with Convolvulaceae

12 September 2017

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Genomic evidence of repeat-induced point mutation (RIP) in filamentous ascomycetes

12 September 2017

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MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

12 September 2017

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Disruption of signaling in a fungal-grass symbiosis leads to pathogenesis

12 September 2017

1 reference

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An old yellow enzyme gene controls the branch point between Aspergillus fumigatus and Claviceps purpurea ergot alkaloid pathways

12 September 2017

1 reference

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The ergot alkaloid gene cluster: functional analyses and evolutionary aspects

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Indole-diterpene biosynthetic capability of epichloë endophytes as predicted by ltm gene analysis

12 September 2017

1 reference

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Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

12 September 2017

1 reference

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Evolutionary origins and ecological consequences of endophyte symbiosis with grasses

12 September 2017

1 reference

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Role of the LolP cytochrome P450 monooxygenase in loline alkaloid biosynthesis

12 September 2017

1 reference

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The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Comparison of loline alkaloid gene clusters across fungal endophytes: predicting the co-regulatory sequence motifs and the evolutionary history

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Defining paxilline biosynthesis in Penicillium paxilli: functional characterization of two cytochrome P450 monooxygenases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

A complex ergovaline gene cluster in epichloe endophytes of grasses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Post-genome research on the biosynthesis of ergot alkaloids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

AUGUSTUS: ab initio prediction of alternative transcripts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

On the sequence of bond formation in loline alkaloid biosynthesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Current treatment issues in female hyperprolactinaemia

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Evolution and organization of a highly dynamic, subtelomeric helicase gene family in the rice blast fungus Magnaporthe grisea

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Expressed sequence tags and genes associated with loline alkaloid expression by the fungal endophyte Neotyphodium uncinatum.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Elimination of ergovaline from a grass-Neotyphodium endophyte symbiosis by genetic modification of the endophyte

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Correlation of endophyte toxins (ergovaline and lolitrem B) with clinical disease: fescue foot and perennial ryegrass staggers

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Molecular cloning and genetic analysis of an indole-diterpene gene cluster from Penicillium paxilli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Chemoraces and habitat specialization of Claviceps purpurea populations

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

A methylated Neurospora 5S rRNA pseudogene contains a transposable element inactivated by repeat-induced point mutation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

The Claviceps purpurea gene encoding dimethylallyltryptophan synthase, the committed step for ergot alkaloid biosynthesis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Paspalum staggers: isolation and identification of tremorgenic metabolites from sclerotia of Claviceps paspali

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Alkaloid cluster gene ccsA of the ergot fungus Claviceps purpurea encodes chanoclavine I synthase, a flavin adenine dinucleotide-containing oxidoreductase mediating the transformation of N-methyl-dimethylallyltryptophan to chanoclavine I.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

The determinant step in ergot alkaloid biosynthesis by an endophyte of perennial ryegrass

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Relationships among non-Acremonium sp. fungal endophytes in five grass species

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Combined analysis of tall fescue steer grazing studies in the Eastern United States.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Rapid extraction of fungal DNA for PCR amplification

27 September 2017

1 reference

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Functional analysis of an indole-diterpene gene cluster for lolitrem B biosynthesis in the grass endosymbiont Epichloë festucae

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Indole-diterpenes and ergot alkaloids in Cynodon dactylon (Bermuda grass) infected with Claviceps cynodontis from an outbreak of tremors in cattle

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Endophyte-mediated resistance to herbivores depends on herbivore identity in the wild grass Festuca subverticillata

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Biosynthesis of N-(alpha-hydroxyethyl) lysergamide, a metabolite of Claviceps paspali Stevens and Hall

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

Interference of alkaloids with neuroreceptors and ion channels

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Chapter 2 Ergot Alkaloids – Biology and Molecular Biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Evolutionary Origins and Ecological Consequences of Endophyte Symbiosis with Grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Endophytic fungi alter relationships between diversity and ecosystem properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Toxicity of endophyte-infected tall fescue alkaloids and grass metabolites on Pratylenchus scribneri.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Reinfection of Tall Fescue Cultivars with Non-Ergot Alkaloid–Producing Endophytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Tremorgenic neurotoxins from perennial ryegrass causing ryegrass staggers disorder of livestock: structure elucidation of lolitrem B

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Biosynthesis and accumulation of ergoline alkaloids in a mutualistic association between Ipomoea asarifolia (Convolvulaceae) and a clavicipitalean fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Nodulisporic acid opens insect glutamate-gated chloride channels: identification of a new high affinity modulator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

The rhizosphere-competent entomopathogen Metarhizium anisopliae expresses a specific subset of genes in plant root exudate

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Four gene products are required for the fungal synthesis of the indole-diterpene, paspaline

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Comparing environmental and genetic variance as adaptive response to fluctuating selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Comparison of ergot alkaloid biosynthesis gene clusters in Claviceps species indicates loss of late pathway steps in evolution of C. fusiformis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Molecular cloning and genetic analysis of a symbiosis-expressed gene cluster for lolitrem biosynthesis from a mutualistic endophyte of perennial ryegrass

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Identification of the cytochrome P450 monooxygenase that bridges the clavine and ergoline alkaloid pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Development of ToxA and ToxB promoter-driven fluorescent protein expression vectors for use in filamentous ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Effects of ergot alkaloids on food preference and satiety in rabbits, as assessed with gene-knockout endophytes in perennial ryegrass (Lolium perenne).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Simplified extraction of ergovaline and peramine for analysis of tissue distribution in endophyte-infected grass tillers

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Targeted cloning of fungal telomeres.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Adaptations of Endophyte-Infected Cool-Season Grasses to Environmental Stresses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Use of a nonhomologous end joining deficient strain (Δku70) of the ergot fungus Claviceps purpurea for identification of a nonribosomal peptide synthetase gene involved in ergotamine biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

Using the Generic Genome Browser (GBrowse).

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3585121

The Use of Genomics and Metabolomics Methods to Quantify Fungal Endosymbionts and Alkaloids in Grasses

29 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

A simple method for extraction of fungal genomic DNA

21 January 2018

1 reference

12 December 2020

Tremorgenic indole alkaloids potently inhibit smooth muscle high-conductance calcium-activated potassium channels

1 reference

12 December 2020

Hedging one's evolutionary bets, revisited

1 reference

12 December 2020

Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies

1 reference

12 December 2020

CPMK2, an SLT2-homologous mitogen-activated protein (MAP) kinase, is essential for pathogenesis of Claviceps purpurea on rye: evidence for a second conserved pathogenesis-related MAP kinase cascade in phytopathogenic fungi

1 reference

12 December 2020

Chemotypic diversity of epichloae, fungal symbionts of grasses

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

7 January 2021

inferred from DOI database lookup

Endophytes of native grasses from South America: Biodiversity and ecology

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

7 January 2021

inferred from DOI database lookup

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003323

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1003323

1 reference

1 reference

1 reference

1 reference