Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi (Q21131387)

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20 February 2020

title

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi (English)

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20 February 2020

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3

Bernard Henrissat

Bernard

Henrissat

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6

Kerrie W Barry

Kerrie W

Barry

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17

Rosie E Bradshaw

Rosie E

Bradshaw

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19

Richard C Hamelin

Richard C

Hamelin

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Gert H J Kema

Gert H J

Kema

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22

James A Scott

James A

Scott

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24

B Gillian Turgeon

B Gillian

Turgeon

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27

Stephen B Goodwin

Stephen B

Goodwin

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28

Igor V Grigoriev

Igor V

Grigoriev

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Conrad Lamoraal Schoch

4

Conrad L Schoch

Conrad L

Schoch

1 reference

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23

Joseph W

Spatafora

Joseph W Spatafora

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16

Asaf A

Salamov

Asaf A Salamov

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13

Kurt

LaButti

Kurt LaButti

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1

Robin A

Ohm

Robin A Ohm

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9

Braham

Dhillon

Braham Dhillon

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18

Lynda

Ciuffetti

Lynda Ciuffetti

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26

Shaobin

Zhong

Shaobin Zhong

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5

Benjamin A

Horwitz

Benjamin A Horwitz

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10

Fabian

Glaser

Fabian Glaser

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11

Cedar N

Hesse

Cedar N Hesse

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12

Idit

Kosti

Idit Kosti

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15

Susan

Lucas

Susan Lucas

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14

Erika A

Lindquist

Erika A Lindquist

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Nicolas Feau

2

Nicolas

Feau

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Bradford J Condon

7

Bradford J

Condon

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Alex C Copeland

8

Alex C

Copeland

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Christopher Lawrence

21

Christopher

Lawrence

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Pierre J G M de Wit

25

Pierre J G M

de Wit

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language of work or name

English

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publication date

6 December 2012

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20 February 2020

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20 February 2020

volume

8

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20 February 2020

issue

12

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20 February 2020

page(s)

e1003037

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Creative Commons CC0 License

20 February 2020

copyright license

start time

6 December 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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Supernumerary chromosomes in filamentous fungi

19 March 2017

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19 March 2017

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

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A unified classification system for eukaryotic transposable elements

7 April 2017

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7 April 2017

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CAFE: a computational tool for the study of gene family evolution

7 April 2017

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7 April 2017

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Ab initio gene finding in Drosophila genomic DNA

7 April 2017

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Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence

7 April 2017

1 reference

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The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry

12 September 2017

1 reference

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Transcription factor Amr1 induces melanin biosynthesis and suppresses virulence in Alternaria brassicicola

12 September 2017

1 reference

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A reappraisal of Microthyriaceae.

12 September 2017

1 reference

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A molecular, morphological and ecological re-appraisal of Venturiales-a new order of Dothideomycetes

12 September 2017

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The genome portal of the Department of Energy Joint Genome Institute

12 September 2017

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Genetics of dothistromin biosynthesis of Dothistroma septosporum: an update.

12 September 2017

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Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

12 September 2017

1 reference

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Rock-inhabiting fungi originated during periods of dry climate in the late Devonian and middle Triassic

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Molecular systematics of the marine Dothideomycetes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

The molecular phylogeny of freshwater Dothideomycetes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

The search for the fungal tree of life

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

12 September 2017

Fungal effector proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Degradation of cellulose by basidiomycetous fungi

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Baudoinia, a new genus to accommodate Torula compniacensis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

AUGUSTUS: ab initio prediction of alternative transcripts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Characterisation of the mating-type locus of the plant pathogenic ascomycete Leptosphaeria maculans.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Biosynthesis of fungal melanins and their importance for human pathogenic fungi

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Secreted proteases from pathogenic fungi

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A cyclic peptide synthetase gene required for pathogenicity of the fungus Cochliobolus carbonum on maize

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Characterization of SNP1, a cell wall-degrading trypsin, produced during infection by Stagonospora nodorum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A methylated Neurospora 5S rRNA pseudogene contains a transposable element inactivated by repeat-induced point mutation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Surface signaling in pathogenesis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Premeiotic instability of repeated sequences in Neurospora crassa

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Allergenic fungi spore records (15 years) and sensitization in patients with respiratory allergy in Thessaloniki-Greece.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

CPR1: a gene encoding a putative signal peptidase that functions in pathogenicity of Colletotrichum graminicola to maize

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Creating and screening Cochliobolus heterostrophus non-ribosomal peptide synthetase mutants.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A conditionally dispensable chromosome controls host-specific pathogenicity in the fungal plant pathogen Alternaria alternata.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A polyketide synthase is required for fungal virulence and production of the polyketide T-toxin

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Cutinase gene disruption in Fusarium solani f sp pisi decreases its virulence on pea.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

A restriction fragment length polymorphism map and electrophoretic karyotype of the fungal maize pathogen Cochliobolus heterostrophus.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3516569

Ethanol physiology in the warehouse-staining fungus, Baudoinia compniacensis

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

The phylogeny of Arthoniales (Pezizomycotina) inferred from nucLSU and RPB2 sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Myconet Volume 14. Part One. Outline of Ascomycota—2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

A taxonomic revision and phylogenetic reconstruction of the Jahnulales (Dothideomycetes), and the new family Manglicolaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

A polyketide synthase gene required for biosynthesis of the aflatoxin-like toxin, dothistromin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Ordering the reductive and cytochrome P450 oxidative steps in demethylsterigmatocystin formation yields general insights into the biosynthesis of aflatoxin and related fungal metabolites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

A metalloprotease from Xanthomonas campestris that specifically degrades proline/hydroxyproline-rich glycoproteins of the plant extracellular matrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Fungal proteinase expression in the interaction of the plant pathogen Magnaporthe poae with its host

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Molecular characterization of a subtilase from the vascular wilt fungus Fusarium oxysporum

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

A secreted lipase of Fusarium graminearum is a virulence factor required for infection of cereals

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

An important role for secreted esterase in disease establishment of the wheat powdery mildew fungus Blumeria graminis f. sp. tritici

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Characteristic features of the nucleotide sequences of yeast mitochondrial ribosomal protein genes as analyzed by computer program GeneMark.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Reliability measures for membrane protein topology prediction algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

The Chitin-BindingCladosporium fulvumEffector Protein Avr4 Is a Virulence Factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

Meiotic behaviour of the minichromosome in the phytopathogenic ascomycete Leptosphaeria maculans

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23236275

12 December 2020

inferred from PubMed ID database lookup

Adhesion Pad Formation and the Involvement of Cutinase and Esterases in the Attachment of Uredospores to the Host Cuticle

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23236275

12 December 2020

inferred from PubMed ID database lookup

Screening of the genus Cercospora for secondary metabolites☆

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

7 January 2021

inferred from DOI database lookup

A 13C NMR study of the biosynthesis of the anthraquinone dothistromin by Dothistroma pini

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

7 January 2021

inferred from DOI database lookup

Ainsworth and Bisby's Dictionary of the Fungi.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003037

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PPAT.1003037

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236275%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236275%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

23236275

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23236275%20AND%20SRC:MED&resulttype=core&format=json