Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates (Q21146717)

17 August 2022

4

Patrick J. Keeling

Patrick J.

Keeling

1 reference

17 August 2022

5

Brian S.

Leander

Brian S Leander

1 reference

17 August 2022

Gregory S Gavelis

1

Gregory S.

Gavelis

1 reference

1024011335

17 August 2022

Richard A White

series ordinal

2

author given names

Richard A.

author last names

White

1 reference

1024011335

Creative Commons Attribution 4.0 International

17 August 2022

language of work or name

English

0 references

publication date

2015

0 references

published in

BMC Genomics

0 references

volume

16

0 references

issue

1

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page(s)

528

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copyright license

start time

17 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12864-015-1636-8

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-1636-8

cites work

Genome analysis of Elysia chlorotica Egg DNA provides no evidence for horizontal gene transfer into the germ line of this Kleptoplastic Mollusc

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Improved prediction of signal peptides: SignalP 3.0

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

The Jalview Java alignment editor

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

MRBAYES: Bayesian inference of phylogenetic trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Molecular phylogeny of noctilucoid dinoflagellates (Noctilucales, Dinophyceae)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Comprehensive human genome amplification using multiple displacement amplification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Evidence for the retention of two evolutionary distinct plastids in dinoflagellates with diatom endosymbionts

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

The spliced leader trans-splicing mechanism in different organisms: molecular details and possible biological roles

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Apical groove type and molecular phylogeny suggests reclassification of Cochlodinium geminatum as Polykrikos geminatum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

The number, speed, and impact of plastid endosymbioses in eukaryotic evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Using nuclear-encoded LSU and SSU rDNA sequences to identify the eukaryotic endosymbiont in Amphisolenia bidentata (Dinophyceae).

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Functional remodeling of RNA processing in replacement chloroplasts by pathways retained from their predecessors

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Transcriptome analysis of foraminiferan Elphidium margaritaceum questions the role of gene transfer in kleptoplastidy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Genomic sequencing of uncultured microorganisms from single cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Multiple plastids collected by the dinoflagellate Dinophysis mitra through kleptoplastidy

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Digital PCR provides absolute quantitation of viral load for an occult RNA virus

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Spliced leader RNA trans-splicing in dinoflagellates

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Survival and growth of Francisella tularensis in Acanthamoeba castellanii

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Growth and grazing rates of the heterotrophic dinoflagellate Polykrikos kofoidii on red-tide and toxic dinoflagellates

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Morphology, phylogeny, dynamics, and ichthyotoxicity of Pheopolykrikos hartmannii (Dinophyceae) isolates and blooms from New York, USA.

27 September 2017

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1636-8

Re-classification of Pheopolykrikos hartmannii as Polykrikos (Dinophyceae) based partly on the ultrastructure of complex extrusomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1636-8

Detection of a novel subspecies of Francisella noatunensis as endosymbiont of the ciliate Euplotes raikovi.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1636-8

Complex protein targeting to dinoflagellate plastids

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1636-8

A tertiary plastid gains RNA editing in its new host.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1636-8

Prediction of signal peptides and signal anchors by a hidden Markov model.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4504456

Plastid ultrastructure defines the protein import pathway in dinoflagellates

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26183220

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Morphology and phylogeny of the pseudocolonial dinoflagellates Polykrikos lebourae and Polykrikos herdmanae n. sp

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26183220

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-015-1636-8

0 references