Overview of the protein-protein interaction annotation extraction task of BioCreative II (Q21183901)

17 August 2022

1

Martin Krallinger

Martin

Krallinger

1 reference

17 August 2022

2

Florian Leitner

Florian

Leitner

1 reference

1010159966

17 August 2022

Carlos Rodriguez-Penagos

series ordinal

3

object named as

Carlos Rodriguez-Penagos

author given names

Carlos

author last names

Rodriguez-Penagos

1 reference

1010159966

An evaluation of human protein-protein interaction data in the public domain

17 August 2022

language of work or name

English

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publication date

2008

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published in

Genome Biology

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volume

9 Suppl 2

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issue

Suppl 2

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page(s)

S4

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

MINT: the Molecular INTeraction database

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Human protein reference database--2006 update

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Reactome: a knowledgebase of biological pathways

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Evaluation of BioCreAtIvE assessment of task 2

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

OntoGene in BioCreative II

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

MIPS: analysis and annotation of genome information in 2007

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

IntAct--open source resource for molecular interaction data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

ROCR: visualizing classifier performance in R

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Concept recognition for extracting protein interaction relations from biomedical text

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Introducing meta-services for biomedical information extraction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Gene mention normalization and interaction extraction with context models and sentence motifs.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Mining physical protein-protein interactions from the literature

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

The minimum information required for reporting a molecular interaction experiment (MIMIx).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

PDZBase: a protein-protein interaction database for PDZ-domains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

A literature network of human genes for high-throughput analysis of gene expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Automating curation using a natural language processing pipeline

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

Text mining and protein annotations: the construction and use of protein description sentences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2559988

29 November 2018

Identifiers

DOI

10.1186/GB-2008-9-S2-S4

1 reference

release_hx656lrmsrbrpb2yb7ny3e75mu

1010159966

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Fatcat ID

0 references

1 reference

0 references

1 reference

PubMed publication ID

18834495

1 reference