High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays (Q21202037)

11 July 2022

17

Joe W

Gray

Joe W Gray

1 reference

11 July 2022

16

Paul T

Spellman

Paul T Spellman

1 reference

11 July 2022

Yuker Wang

1

Yuker

Wang

1 reference

11 July 2022

Victoria E H Carlton

2

Victoria E H

Carlton

1 reference

11 July 2022

George Karlin-Neumann

3

George

Karlin-Neumann

1 reference

11 July 2022

Ronald Sapolsky

4

Ronald

Sapolsky

1 reference

11 July 2022

Li Zhang

5

Li

Zhang

1 reference

11 July 2022

Martin Moorhead

6

Martin

Moorhead

1 reference

11 July 2022

Zhigang C Wang

7

Zhigang C

Wang

1 reference

11 July 2022

Andrea L Richardson

8

Andrea L

Richardson

1 reference

11 July 2022

Robert Warren

9

Robert

Warren

1 reference

11 July 2022

Axel Walther

10

Axel

Walther

1 reference

11 July 2022

Melissa Bondy

11

Melissa

Bondy

1 reference

11 July 2022

Aysegul Sahin

12

Aysegul

Sahin

1 reference

11 July 2022

Ralf Krahe

13

Ralf

Krahe

1 reference

11 July 2022

Musaffe Tuna

14

Musaffe

Tuna

1 reference

11 July 2022

Patricia A Thompson

15

Patricia A

Thompson

1 reference

11 July 2022

Malek Faham

19

Malek

Faham

1 reference

Analysis of molecular inversion probe performance for allele copy number determination

11 July 2022

language of work or name

English

0 references

publication date

2009

0 references

published in

BMC Medical Genomics

0 references

volume

2

0 references

issue

1

0 references

page(s)

8

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Allele quantification using molecular inversion probes (MIP).

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Genome characteristics of primary carcinomas, local recurrences, carcinomatoses, and liver metastases from colorectal cancer patients

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

K-ras mutations and benefit from cetuximab in advanced colorectal cancer.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Identification of Stk6/STK15 as a candidate low-penetrance tumor-susceptibility gene in mouse and human

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Multiplexed genotyping with sequence-tagged molecular inversion probes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Genomic alterations indicate tumor origin and varied metastatic potential of disseminated cells from prostate cancer patients

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

GeneCount: genome-wide calculation of absolute tumor DNA copy numbers from array comparative genomic hybridization data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Optimization of the Affymetrix GeneChip Mapping 10K 2.0 Assay for routine clinical use on formalin-fixed paraffin-embedded tissues

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Can bladder adenocarcinomas be distinguished from schistosomiasis-associated bladder cancers by using array comparative genomic hybridization analysis?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Tissue preparation: Tissue issues

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

The Genome Austria Tissue Bank (GATiB).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Comparison of archival plasma and formalin-fixed paraffin-embedded tissue for genotyping in hepatocellular carcinoma.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Identification errors in pathology and laboratory medicine

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

PCR analysis in archival postmortem tissues

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Effect of fixatives and tissue processing on the content and integrity of nucleic acids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Surgical specimen identification errors: a new measure of quality in surgical care

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649948

Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays

27 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-2-8

Reliable High-Throughput Genotyping and Loss-of-Heterozygosity Detection in Formalin-Fixed, Paraffin-Embedded Tumors Using Single Nucleotide Polymorphism Arrays

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1755-8794-2-8

Fractional genomic alteration detected by array-based comparative genomic hybridization independently predicts survival after hepatic resection for metastatic colorectal cancer

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19228381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HER2 status and efficacy of adjuvant anthracyclines in early breast cancer: a pooled analysis of randomized trials

1 reference

https://pubmed.ncbi.nlm.nih.gov/19228381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays

1 reference

https://pubmed.ncbi.nlm.nih.gov/19228381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1755-8794-2-8

1 reference

Dimensions Publication ID

1046400945

0 references

Fatcat ID

release_jdzkpltcvnfd7jledz3ru4o3e4

0 references

1 reference

1 reference

1 reference