A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land (Q21283975)

Dimensions

18 August 2022

3

S Blair Hedges

S Blair

Hedges

1 reference

Dimensions

18 August 2022

Andreia Feijao

2

Andreia

Feijao

1 reference

Dimensions

1004081702

A molecular timescale of eukaryote evolution and the rise of complex multicellular life

18 August 2022

language of work or name

English

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publication date

9 November 2004

0 references

published in

BMC Evolutionary Biology

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volume

4

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issue

1

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page(s)

44

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cites work

1 reference

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Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox

19 March 2017

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Phylogenetic analysis of bacterial and archaeal arsC gene sequences suggests an ancient, common origin for arsenate reductase

19 March 2017

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The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

19 March 2017

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Genome trees constructed using five different approaches suggest new major bacterial clades

19 March 2017

1 reference

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A genomic timescale for the origin of eukaryotes

19 March 2017

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

19 March 2017

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Horizontal gene transfer among genomes: the complexity hypothesis

19 March 2017

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The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus

19 March 2017

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Determining divergence times with a protein clock: update and reevaluation

19 March 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

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Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation

19 March 2017

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The winds of (evolutionary) change: breathing new life into microbiology

19 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

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Lateral Gene Transfer and the Origins of Prokaryotic Groups

19 March 2017

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MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

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19 March 2017

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PAML: a program package for phylogenetic analysis by maximum likelihood

19 March 2017

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Archean microfossils: a reappraisal of early life on Earth

19 March 2017

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Microfossils of the Early Archean Apex chert: new evidence of the antiquity of life

19 March 2017

1 reference

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Evidence for life on Earth before 3,800 million years ago

19 March 2017

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Desiccation tolerance of prokaryotes

19 March 2017

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Phylogenetic classification and the universal tree

19 March 2017

1 reference

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Estimating the rate of evolution of the rate of molecular evolution

7 April 2017

1 reference

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Prokaryotic evolution in light of gene transfer

7 April 2017

1 reference

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The origin and evolution of model organisms

7 April 2017

1 reference

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Genome phylogeny based on gene content

7 April 2017

1 reference

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Evolution in bacteria: evidence for a universal substitution rate in cellular genomes

7 April 2017

1 reference

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Precision of molecular time estimates

7 April 2017

1 reference

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The enigmatic planctomycetes may hold a key to the origins of methanogenesis and methylotrophy

12 September 2017

1 reference

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Earth's oldest (approximately 3.5 Ga) fossils and the 'Early Eden hypothesis': questioning the evidence

12 September 2017

1 reference

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Lateral gene transfer: when will adolescence end?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Horizontal gene transfer: the path to maturity

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Horizontal gene transfer and phylogenetics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Phylogenetics and the cohesion of bacterial genomes

12 September 2017

1 reference

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Genomic DNA of Nostoc commune (Cyanobacteria) becomes covalently modified during long-term (decades) desiccation but is protected from oxidative damage and degradation

12 September 2017

1 reference

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Ancient horizontal gene transfer

12 September 2017

1 reference

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Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Genome trees and the tree of life

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

12 September 2017

Evolution of the Archaea

1 reference

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Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Questioning the evidence for Earth's oldest fossils

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Laser--Raman imagery of Earth's earliest fossils

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

The antiquity of oxygenic photosynthesis: evidence from stromatolites in sulphate-deficient Archaean lakes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Phylogenetic analysis of evolutionary relationships of the planctomycete division of the domain bacteria based on amino acid sequences of elongation factor Tu.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

A coupled ecosystem-climate model for predicting the methane concentration in the Archean atmosphere

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Universal trees based on large combined protein sequence data sets.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

The habitat and nature of early life

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Oxygen-isotope evidence from ancient zircons for liquid water at the Earth's surface 4,300 Myr ago.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Geochemical evidence for terrestrial ecosystems 2.6 billion years ago.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Evolution. When did photosynthesis emerge on Earth?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: influence of excluding poorly alignable sites from analysis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

The archaea monophyly issue: A phylogeny of translational elongation factor G(2) sequences inferred from an optimized selection of alignment positions.

12 September 2017

1 reference

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The genomic tree as revealed from whole proteome comparisons

12 September 2017

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Evidence that eukaryotes and eocyte prokaryotes are immediate relatives

12 September 2017

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A phylogenomic study of endosymbiotic bacteria

12 September 2017

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Proterozoic history and present state of cyanobacteria

27 September 2017

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Defining the core of nontransferable prokaryotic genes: the euryarchaeal core

30 May 2018

1 reference

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Molecular evidence for the early evolution of photosynthesis.

30 May 2018

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Determining the relative rates of change for prokaryotic and eukaryotic proteins with anciently duplicated paralogs

30 May 2018

1 reference

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Determining divergence times of the major kingdoms of living organisms with a protein clock

30 May 2018

1 reference

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Evidence from massive siderite beds for a CO2-rich atmosphere before approximately 1.8 billion years ago.

30 May 2018

1 reference

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Genomic clocks and evolutionary timescales.

29 November 2018

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Neoarchean biomineralization by benthic cyanobacteria.

29 November 2018

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Whole-Genome Analysis of Photosynthetic Prokaryotes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Archaeal phylogeny based on ribosomal proteins

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

Bacterial molecular phylogeny using supertree approach.

29 November 2018

1 reference

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Eubacterial phylogeny based on translational apparatus proteins

29 November 2018

1 reference

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Greenhouse warming by CH4 in the atmosphere of early Earth

29 November 2018

1 reference

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Mesoproterozoic Archaeoellipsoides: akinetes of heterocystous cyanobacteria

29 November 2018

1 reference

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The history of the UV radiation climate of the earth--theoretical and space-based observations

29 November 2018

1 reference

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A marine microbial consortium apparently mediating anaerobic oxidation of methane

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=533871

2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis

29 November 2018

1 reference

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The Phylogeny of Methanopyrus kandleri

29 November 2018

1 reference

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Protection of photosynthesis against ultraviolet-B radiation by carotenoids in transformants of the cyanobacterium synechococcus PCC7942

29 November 2018

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12 December 2020

Resolving a methane mystery

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12 December 2020

The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome

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12 December 2020

Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis

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12 December 2020

Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens

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12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

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12 December 2020

Identifiers

DOI

10.1186/1471-2148-4-44

1 reference

599676

https://scigraph.springernature.com/pub.10.1186/1471-2148-4-44

1 reference

9 September 2019

599676

1 reference

1 reference

1 reference