OpenMS - an open-source software framework for mass spectrometry (Q21284208)

Europe PubMed Central

title

OpenMS - an open-source software framework for mass spectrometry (English)

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1 reference

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11

Oliver Kohlbacher

Oliver

Kohlbacher

1 reference

18 August 2022

10

Knut Reinert

Knut

Reinert

1 reference

18 August 2022

2

Andreas Bertsch

Andreas

Bertsch

1 reference

18 August 2022

8

Ole Schulz-Trieglaff

Ole

Schulz-Trieglaff

1 reference

18 August 2022

7

Nico Pfeifer

Nico

Pfeifer

1 reference

18 August 2022

4

Andreas Hildebrandt

Andreas

Hildebrandt

1 reference

18 August 2022

Marc Sturm

1

Marc

Sturm

2 references

ORCID Public Data File 2021

ORCID Public Data File 2021

18 August 2022

1 reference

Clemens Gröpl

3

Clemens

Gröpl

1 reference

18 August 2022

Rene Hussong

series ordinal

5

author given names

Rene

author last names

Hussong

1 reference

18 August 2022

Eva Lange

series ordinal

6

author given names

Eva

author last names

Lange

1 reference

18 August 2022

Alexandra Zerck

series ordinal

9

author given names

Alexandra

author last names

Zerck

1 reference

Creative Commons Attribution 2.0 Generic

18 August 2022

language of work or name

English

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publication date

2008

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published in

BMC Bioinformatics

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volume

9

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issue

1

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page(s)

163

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copyright license

start time

26 March 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

uses

OpenMS

1 reference

http://www.openms.de/publications/

describes a project that uses

13 October 2017

SQL

1 reference

Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC2311306

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A common open representation of mass spectrometry data and its application to proteomics research

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Open mass spectrometry search algorithm

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A geometric approach for the alignment of liquid chromatography-mass spectrometry data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

TOPP--the OpenMS proteomics pipeline

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

High-accuracy peak picking of proteomics data using wavelet techniques

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Absolute myoglobin quantitation in serum by combining two-dimensional liquid chromatography-electrospray ionization mass spectrometry and novel data analysis algorithms

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Mathematical functions for the representation of chromatographic peaks

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Automatic poisson peak harvesting for high throughput protein identification

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

MapQuant: open-source software for large-scale protein quantification

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Matching Images to Models for Registration and Object Detection via Clustering.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4–6, 2005

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2311306

Generalizing the Hough transform to detect arbitrary shapes

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-9-163

inferred from DOI database lookup

7 January 2021

based on heuristic

Smoothing and Differentiation of Data by Simplified Least Squares Procedures

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-9-163

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-163

1 reference

journals/bmcbi/SturmBGHHLPSZRK08

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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1 reference

1 reference

PubMed publication ID

18366760

1 reference