GraphDNA: a Java program for graphical display of DNA composition analyses (Q21284228)

Europe PubMed Central

title

GraphDNA: a Java program for graphical display of DNA composition analyses (English)

0 references

5

Chris Upton

Chris

Upton

1 reference

18 August 2022

Jamie M Thomas

1

Jamie M

Thomas

1 reference

18 August 2022

Daniel Horspool

series ordinal

2

author given names

Daniel

author last names

Horspool

1 reference

18 August 2022

Gordon Brown

series ordinal

3

author given names

Gordon

author last names

Brown

1 reference

18 August 2022

Vasily Tcherepanov

series ordinal

4

author given names

Vasily

author last names

Tcherepanov

1 reference

GC-compositional strand bias around transcription start sites in plants and fungi

18 August 2022

language of work or name

English

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publication date

2007

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published in

BMC Bioinformatics

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volume

8

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issue

1

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page(s)

21

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cites work

1 reference

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Using purine skews to predict genes in AT-rich poxviruses

19 March 2017

1 reference

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Genome structure and transcriptional regulation of human coronavirus NL63

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

19 March 2017

1 reference

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Analyzing genomes with cumulative skew diagrams

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Artemis: sequence visualization and annotation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

The Genome sequence of the SARS-associated coronavirus

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Asymmetric substitution patterns in the two DNA strands of bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Mutational patterns correlate with genome organization in SARS and other coronaviruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Strand compositional asymmetries of nuclear DNA in eukaryotes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Poxvirus Orthologous Clusters (POCs).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Ongoing evolution of strand composition in bacterial genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Strand compositional asymmetry in bacterial and large viral genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Strand asymmetries in DNA evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Strand-specific compositional asymmetries in double-stranded DNA viruses.

27 September 2017

1 reference

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A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Testing the hypothesis of a recombinant origin of the SARS-associated coronavirus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

DNAskew: statistical analysis of base compositional asymmetry and prediction of replication boundaries in the genome sequences

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Transcription-coupled TA and GC strand asymmetries in the human genome.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Phylogeny of the SARS coronavirus.

29 November 2018

1 reference

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Composition strand asymmetries in prokaryotic genomes: mutational bias and biased gene orientation.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Screening predicted coding regions in poxvirus genomes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1783863

Graphical genome comparison: rearrangements and replication origin of Helicobacter pylori

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17244370

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-21

1 reference

journals/bmcbi/ThomasHBTU07

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

release_gha3hi7n3jdrpkzxmacuvcj4ee

0 references

Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

17244370

1 reference