Comparing sequences without using alignments: application to HIV/SIV subtyping (Q21284233)

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23 December 2019

title

Comparing sequences without using alignments: application to HIV/SIV subtyping (English)

1 reference

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23 December 2019

1 reference

1

Gilles Didier

Gilles

Didier

1 reference

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23 December 2019

3

Maude Pupin

Maude

Pupin

1 reference

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23 December 2019

5

Alexander

Grossmann

Alexander Grossmann

1 reference

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23 December 2019

Laurent Debomy

2

Laurent

Debomy

1 reference

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23 December 2019

Ming Zhang

series ordinal

4

author given names

Ming

author last names

Zhang

1 reference

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23 December 2019

Claudine Devauchelle

series ordinal

6

author given names

Claudine

author last names

Devauchelle

1 reference

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23 December 2019

Ivan Laprevotte

series ordinal

7

author given names

Ivan

author last names

Laprevotte

1 reference

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23 December 2019

language of work or name

English

0 references

publication date

2 January 2007

1 reference

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23 December 2019

1 reference

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23 December 2019

volume

8

1 reference

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23 December 2019

issue

1

0 references

page(s)

1

1 reference

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https://scigraph.springernature.com/pub.10.1186/1471-2105-8-1

23 December 2019

exact match

0 references

cites work

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Profile hidden Markov models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Multiple sequence alignment using partial order graphs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Comparisons of eukaryotic genomic sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

A novel method for multiple alignment of sequences with repeated and shuffled elements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Local decoding of sequences and alignment-free comparison.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

HIV-1 and HIV-2 LTR nucleotide sequences: assessment of the alignment by N-block presentation, "retroviral signatures" of overrepeated oligonucleotides, and a probable important role of scrambled stepwise duplications/deletions in molecular evolutio

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

HIV-1 nomenclature proposal.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Retroviral oligonucleotide distributions correlate with biased nucleotide compositions of retrovirus sequences, suggesting a duplicative stepwise molecular evolution.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1766362

Confidence Limits on Phylogenies: an Approach using the Bootstrap

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17199892

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-1

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17199892%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/DidierDPZGDL07

23 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1027920111

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17199892%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

2 references