Tools for integrated sequence-structure analysis with UCSF Chimera (Q21284249)

22 June 2017

1 reference

title

Tools for integrated sequence-structure analysis with UCSF Chimera (English)

1 reference

22 June 2017

5

Thomas E Ferrin

Thomas E

Ferrin

1 reference

22 June 2017

Elaine C Meng

1

Elaine C

Meng

1 reference

22 June 2017

Eric F Pettersen

series ordinal

2

author given names

Eric F

author last names

Pettersen

1 reference

22 June 2017

Gregory S Couch

series ordinal

3

author given names

Gregory S

author last names

Couch

1 reference

22 June 2017

Conrad C Huang

series ordinal

4

author given names

Conrad C

author last names

Huang

1 reference

22 June 2017

language of work or name

English

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publication date

12 July 2006

1 reference

22 June 2017

1 reference

22 June 2017

7

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22 June 2017

339

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https://scigraph.springernature.com/pub.10.1186/1471-2105-7-339

22 June 2017

1

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exact match

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cites work

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

19 March 2017

The Diamond STING server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

The Pfam protein families database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

19 March 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Amino acid substitution matrices from protein blocks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

UCSF Chimera--a visualization system for exploratory research and analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

VMD: visual molecular dynamics

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

SCOP: a structural classification of proteins database for the investigation of sequences and structures

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

PROSITE: a documented database using patterns and profiles as motif descriptors

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Cn3D: sequence and structure views for Entrez

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

SCOP database in 2004: refinements integrate structure and sequence family data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Multiple Alignment of protein structures and sequences for VMD.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Friend, an integrated analytical front-end application for bioinformatics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

The ASTRAL Compendium in 2004

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

KISS for STRAP: user extensions for a protein alignment editor

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

AL2CO: calculation of positional conservation in a protein sequence alignment.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Optimization of multiple-sequence alignment based on multiple-structure alignment

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1570152

Assessing the performance of fold recognition methods by means of a comprehensive benchmark

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16836757

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ViTO: tool for refinement of protein sequence-structure alignments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16836757

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ModView, visualization of multiple protein sequences and structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16836757

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-339

1 reference

journals/bmcbi/MengPCHF06

22 June 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

0 references

1 reference