Automated image computing reshapes computational neuroscience (Q21284306)

Dimensions

19 August 2022

Hanchuan Peng

1

Hanchuan

Peng

1 reference

Dimensions

1046087851

19 August 2022

Badrinath Roysam

series ordinal

2

author given names

Badrinath

author last names

Roysam

1 reference

Dimensions

1046087851

Creative Commons Attribution 2.0 Generic

19 August 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

BMC Bioinformatics

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volume

14

0 references

issue

1

0 references

page(s)

293

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copyright license

start time

4 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

Automated whole-cell patch-clamp electrophysiology of neurons in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Simultaneous recognition and segmentation of cells: application in C.elegans

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Bioimage informatics: a new area of engineering biology

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Genome-wide atlas of gene expression in the adult mouse brain

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Large-scale automated histology in the pursuit of connectomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Computational methods and challenges for large-scale circuit mapping

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Automated tracking of whiskers in videos of head fixed rodents

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

19 March 2017

The blue brain project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Structural and molecular interrogation of intact biological systems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Structural neurobiology: missing link to a mechanistic understanding of neural computation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Non-homogeneous stereological properties of the rat hippocampus from high-resolution 3D serial reconstruction of thin histological sections

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Optimization of a 96-Well Electroporation Assay for Postnatal Rat CNS Neurons Suitable for Cost-Effective Medium-Throughput Screening of Genes that Promote Neurite Outgrowth

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Optical super-resolution microscopy in neurobiology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

BrainAligner: 3D registration atlases of Drosophila brains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Wiring specificity in the direction-selectivity circuit of the retina

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Extraction of Network Topology From Multi-Electrode Recordings: Is there a Small-World Effect?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Diadem X: automated 4 dimensional analysis of morphological data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Automated reconstruction of neuronal morphology: an overview.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Machines that learn to segment images: a crucial technology for connectomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

A 3D digital atlas of C. elegans and its application to single-cell analyses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

NeuroMorpho.Org: a central resource for neuronal morphologies.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Array tomography: a new tool for imaging the molecular architecture and ultrastructure of neural circuits

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Wiring optimization can relate neuronal structure and function

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

The DIADEM metric: comparing multiple reconstructions of the same neuron

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

JAABA: interactive machine learning for automatic annotation of animal behavior

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

Robustness and fault tolerance make brains harder to study

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

GFP Reconstitution Across Synaptic Partners (GRASP) defines cell contacts and synapses in living nervous systems.

30 May 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

21 January 2018

The DIADEM and beyond

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

The network formation assay: a spatially standardized neurite outgrowth analytical display for neurotoxicity screening

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

Sympathetic nerve fiber repulsion: testing norepinephrine, dopamine, and 17β-estradiol in a primary murine sympathetic neurite outgrowth assay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

High-accuracy neurite reconstruction for high-throughput neuroanatomy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-293

Neuroscience: Observatories of the mind

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3853071

29 November 2018

Identifiers

DOI

10.1186/1471-2105-14-293

0 references

DBLP publication ID

journals/bmcbi/PengRA13

1 reference

DBLP Dataset 2021-01-02

28 January 2021