Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems (Q21508512)

27 August 2022

12

Eugene V Koonin

Eugene V

Koonin

1 reference

27 August 2022

Sergey Shmakov

1

Sergey

Shmakov

1 reference

27 August 2022

Omar O. Abudayyeh

2

Omar O

Abudayyeh

1 reference

27 August 2022

Kira S. Makarova

3

Kira S

Makarova

1 reference

27 August 2022

Yuri I. Wolf

4

Yuri I

Wolf

1 reference

27 August 2022

Jonathan S. Gootenberg

5

Jonathan S

Gootenberg

1 reference

27 August 2022

Ekaterina Semenova

6

Ekaterina

Semenova

1 reference

27 August 2022

Leonid Minakhin

7

Leonid

Minakhin

1 reference

27 August 2022

Julia Joung

8

Julia

Joung

1 reference

27 August 2022

Konstantin Severinov

10

Konstantin

Severinov

1 reference

27 August 2022

Feng Zhang

11

Feng

Zhang

1 reference

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system

27 August 2022

language of work or name

English

0 references

publication date

November 2015

0 references

published in

Molecular Cell

0 references

volume

60

0 references

issue

3

0 references

page(s)

385-397

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cites work

1 reference

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19 March 2017

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RNA-guided editing of bacterial genomes using CRISPR-Cas systems

19 March 2017

1 reference

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Efficient genome editing in zebrafish using a CRISPR-Cas system

19 March 2017

1 reference

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Multiplex genome engineering using CRISPR/Cas systems

19 March 2017

1 reference

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CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III

19 March 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

19 March 2017

1 reference

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

19 March 2017

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

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Mfold web server for nucleic acid folding and hybridization prediction

19 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

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A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

19 March 2017

1 reference

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

19 March 2017

1 reference

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Classification and evolution of type II CRISPR-Cas systems

19 March 2017

1 reference

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CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity

19 March 2017

1 reference

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Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease

19 March 2017

1 reference

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Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA

19 March 2017

1 reference

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PILER-CR: fast and accurate identification of CRISPR repeats

19 March 2017

1 reference

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

19 March 2017

1 reference

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RNA-programmed genome editing in human cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease

19 March 2017

1 reference

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The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

19 March 2017

1 reference

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CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

19 March 2017

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

19 March 2017

1 reference

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Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Evolution and classification of the CRISPR-Cas systems

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex

7 April 2017

1 reference

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CDD: a database of conserved domain alignments with links to domain three-dimensional structure

7 April 2017

1 reference

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GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 April 2017

1 reference

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An updated evolutionary classification of CRISPR-Cas systems

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Annotation and Classification of CRISPR-Cas Systems.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Three CRISPR-Cas immune effector complexes coexist in Pyrococcus furiosus.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

JPred4: a protein secondary structure prediction server

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Target RNA capture and cleavage by the Cmr type III-B CRISPR-Cas effector complex

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity

12 September 2017

1 reference

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Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

The basic building blocks and evolution of CRISPR-CAS systems

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

A CRISPR/Cas system mediates bacterial innate immune evasion and virulence

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Diversity of CRISPR systems in the euryarchaeal Pyrococcales

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

CDD: conserved domains and protein three-dimensional structure

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Nature and intensity of selection pressure on CRISPR-associated genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Database indexing for production MegaBLAST searches

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Homing endonuclease structure and function

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Alicyclobacillus spp. in the fruit juice industry: history, characteristics, and current isolation/detection procedures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Investigating CRISPR RNA Biogenesis and Function Using RNA-seq

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

HHsenser: exhaustive transitive profile search using HMM-HMM comparison

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

An archaeal CRISPR type III-B system exhibiting distinctive RNA targeting features and mediating dual RNA and DNA interference.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Evolution of adaptive immunity from transposable elements combined with innate immune systems

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

First indication for a functional CRISPR/Cas system in Francisella tularensis

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4660269

OpenCFU, a new free and open-source software to count cell colonies and other circular objects

29 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.MOLCEL.2015.10.008

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2015.10.008

1 reference

release_t6rnubov55b4rffv7mvfxhfjjy

Fatcat ID

0 references

1 reference

1 reference

1 reference