The footprint of genome architecture in the largest genome expansion in RNA viruses (Q21558776)

1 September 2022

Alexander E. Gorbalenya

object named as

Alexander E Gorbalenya

7

Alexander E

Gorbalenya

1 reference

1 September 2022

Jelle J Goeman

2

Jelle J

Goeman

1 reference

1 September 2022

Chris Lauber

1

Chris

Lauber

1 reference

1 September 2022

Maria del Carmen Parquet

3

Maria del Carmen

Parquet

1 reference

1 September 2022

Phan Thi Nga

4

Phan Thi

Nga

1 reference

1 September 2022

Kouichi Morita

6

Kouichi

Morita

1 reference

Creative Commons Attribution 4.0 International

1 September 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

PLOS Pathogens

0 references

volume

9

0 references

issue

7

0 references

page(s)

e1003500

0 references

copyright license

start time

18 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Biochemical and Structural Insights into the Mechanisms of SARS Coronavirus RNA Ribose 2′-O-Methylation by nsp16/nsp10 Protein Complex

19 March 2017

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19 March 2017

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A second, non-canonical RNA-dependent RNA polymerase in SARS Coronavirus

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Structure of arterivirus nsp4. The smallest chymotrypsin-like proteinase with an alpha/beta C-terminal extension and alternate conformations of the oxyanion hole

19 March 2017

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Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain

19 March 2017

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The human coronavirus 229E superfamily 1 helicase has RNA and DNA duplex-unwinding activities with 5'-to-3' polarity

19 March 2017

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The predicted metal-binding region of the arterivirus helicase protein is involved in subgenomic mRNA synthesis, genome replication, and virion biogenesis.

19 March 2017

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Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily

19 March 2017

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PAML 4: phylogenetic analysis by maximum likelihood

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

19 March 2017

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In vitro reconstitution of SARS-coronavirus mRNA cap methylation

19 March 2017

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Genome-wide analysis of protein-protein interactions and involvement of viral proteins in SARS-CoV replication

19 March 2017

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Real ribozymes suggest a relaxed error threshold

19 March 2017

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The major evolutionary transitions

19 March 2017

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A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease

7 April 2017

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12 September 2017

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RNA 3'-end mismatch excision by the severe acute respiratory syndrome coronavirus nonstructural protein nsp10/nsp14 exoribonuclease complex

12 September 2017

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Non-canonical translation in RNA viruses

12 September 2017

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An insect nidovirus emerging from a primary tropical rainforest

12 September 2017

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Coronaviruses: an RNA proofreading machine regulates replication fidelity and diversity

12 September 2017

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What does virus evolution tell us about virus origins?

12 September 2017

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Ribose 2'-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5.

12 September 2017

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Alphacoronavirus transmissible gastroenteritis virus nsp1 protein suppresses protein translation in mammalian cells and in cell-free HeLa cell extracts but not in rabbit reticulocyte lysate

12 September 2017

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12 September 2017

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Arterivirus Nsp1 modulates the accumulation of minus-strand templates to control the relative abundance of viral mRNAs

12 September 2017

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Biochemical characterization of arterivirus nonstructural protein 11 reveals the nidovirus-wide conservation of a replicative endoribonuclease

12 September 2017

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Mechanisms of severe acute respiratory syndrome pathogenesis and innate immunomodulation

12 September 2017

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Parallel adaptations to high temperatures in the Archaean eon.

12 September 2017

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Virus evolution: how far does the double beta-barrel viral lineage extend?

12 September 2017

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Size regulation of ss-RNA viruses

12 September 2017

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SARS-coronavirus replication/transcription complexes are membrane-protected and need a host factor for activity in vitro

12 September 2017

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Biophysics of viral infectivity: matching genome length with capsid size.

12 September 2017

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Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.

12 September 2017

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High fidelity of murine hepatitis virus replication is decreased in nsp14 exoribonuclease mutants.

12 September 2017

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SARS coronavirus replicase proteins in pathogenesis

12 September 2017

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Electrostatic origin of the genome packing in viruses

12 September 2017

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A contemporary view of coronavirus transcription.

12 September 2017

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Severe acute respiratory syndrome coronavirus nsp1 protein suppresses host gene expression by promoting host mRNA degradation

12 September 2017

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The molecular biology of coronaviruses

12 September 2017

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Biochemical aspects of coronavirus replication and virus-host interaction.

12 September 2017

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Structure, function and evolution of the hemagglutinin-esterase proteins of corona- and toroviruses

12 September 2017

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Discovery of an RNA virus 3'->5' exoribonuclease that is critically involved in coronavirus RNA synthesis

12 September 2017

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Nidovirales: evolving the largest RNA virus genome

12 September 2017

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Insights into SARS-CoV transcription and replication from the structure of the nsp7-nsp8 hexadecamer

12 September 2017

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The coronavirus replicase.

12 September 2017

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12 September 2017

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Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity

12 September 2017

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Identification and characterization of severe acute respiratory syndrome coronavirus replicase proteins

12 September 2017

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Major genetic marker of nidoviruses encodes a replicative endoribonuclease

12 September 2017

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Big nidovirus genome. When count and order of domains matter.

12 September 2017

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A zinc finger-containing papain-like protease couples subgenomic mRNA synthesis to genome translation in a positive-stranded RNA virus.

12 September 2017

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The evolution of mutation rates: separating causes from consequences

12 September 2017

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12 September 2017

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The putative helicase of the coronavirus mouse hepatitis virus is processed from the replicase gene polyprotein and localizes in complexes that are active in viral RNA synthesis.

12 September 2017

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Colocalization and membrane association of murine hepatitis virus gene 1 products and De novo-synthesized viral RNA in infected cells.

12 September 2017

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An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV.

12 September 2017

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A novel superfamily of nucleoside triphosphate-binding motif containing proteins which are probably involved in duplex unwinding in DNA and RNA replication and recombination

12 September 2017

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Viral proteins containing the purine NTP-binding sequence pattern

12 September 2017

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Lack of evidence for proofreading mechanisms associated with an RNA virus polymerase

12 September 2017

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The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent

12 September 2017

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The SARS-Coronavirus PLnc domain of nsp3 as a replication/transcription scaffolding protein

27 September 2017

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ADP-ribose-1"-monophosphatase: a conserved coronavirus enzyme that is dispensable for viral replication in tissue culture

27 September 2017

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A complex zinc finger controls the enzymatic activities of nidovirus helicases

27 September 2017

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Viral replicase gene products suffice for coronavirus discontinuous transcription

27 September 2017

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Biochemical characterization of the equine arteritis virus helicase suggests a close functional relationship between arterivirus and coronavirus helicases

27 September 2017

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ORF1a-encoded replicase subunits are involved in the membrane association of the arterivirus replication complex

27 September 2017

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Coronavirus genome: prediction of putative functional domains in the non-structural polyprotein by comparative amino acid sequence analysis.

27 September 2017

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Detection of nonstructural protein 6 in murine coronavirus-infected cells and analysis of the transmembrane topology by using bioinformatics and molecular approaches

27 September 2017

1 reference

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Antagonism of the interferon-induced OAS-RNase L pathway by murine coronavirus ns2 protein is required for virus replication and liver pathology

27 September 2017

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Gain, preservation, and loss of a group 1a coronavirus accessory glycoprotein

30 May 2018

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Coronavirus nonstructural protein 16 is a cap-0 binding enzyme possessing (nucleoside-2'O)-methyltransferase activity

30 May 2018

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30 May 2018

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The complete genome sequence of gill-associated virus of Penaeus monodon prawns indicates a gene organisation unique among nidoviruses

30 May 2018

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Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus

30 May 2018

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Putative papain-related thiol proteases of positive-strand RNA viruses. Identification of rubi- and aphthovirus proteases and delineation of a novel conserved domain associated with proteases of rubi-, alpha- and coronaviruses

30 May 2018

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30 May 2018

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Expression, purification, and characterization of SARS coronavirus RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Pacing a small cage: mutation and RNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Why genes overlap in viruses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Feline infectious peritonitis: insights into feline coronavirus pathobiogenesis and epidemiology based on genetic analysis of the viral 3c gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Phylogenies and the Comparative Method

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

A new superfamily of replicative proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

Position-based sequence weights

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23874204

12 December 2020

inferred from PubMed ID database lookup

A Human RNA Viral Cysteine Proteinase That Depends upon a Unique Zn2+-binding Finger Connecting the Two Domains of a Papain-like Fold

1 reference

https://pubmed.ncbi.nlm.nih.gov/23874204

12 December 2020

inferred from PubMed ID database lookup

The evolution of mutation rates: separating causes from consequences

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

7 January 2021

inferred from DOI database lookup

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

7 January 2021

inferred from DOI database lookup

Monotone Regression Splines in Action

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003500

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PPAT.1003500

0 references

PMC publication ID

3715407

0 references