Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones (Q21559705)

18 September 2022

Hongyan Xu

2

Hongyan

Xu

1 reference

18 September 2022

Siew Hong Lam

3

Siew Hong

Lam

1 reference

18 September 2022

Huaien Luo

4

Huaien

Luo

1 reference

18 September 2022

R Krishna Murthy Karuturi

5

R Krishna Murthy

Karuturi

1 reference

18 September 2022

Zhiyuan Gong

6

Zhiyuan

Gong

1 reference

Creative Commons Attribution 4.0 International

18 September 2022

language of work or name

English

0 references

publication date

2013

0 references

published in

PLOS One

0 references

volume

8

0 references

issue

1

0 references

page(s)

e53562

0 references

copyright license

start time

17 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors

7 April 2017

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Role of Estrogen Receptor-α in the Regulation of Claudin-6 Expression in Breast Cancer Cells

12 September 2017

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Estrogen induces c-myc gene expression via an upstream enhancer activated by the estrogen receptor and the AP-1 transcription factor

12 September 2017

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Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines

12 September 2017

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Mitogen-activated protein kinase kinases promote mitochondrial biogenesis in part through inducing peroxisome proliferator-activated receptor γ coactivator-1β expression

12 September 2017

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Drinks like a fish: using zebrafish to understand alcoholic liver disease

12 September 2017

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Global proteomics analysis of testis and ovary in adult zebrafish (Danio rerio).

12 September 2017

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deLiver'in regeneration: injury response and development

12 September 2017

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The mitochondrial import gene tomm22 is specifically required for hepatocyte survival and provides a liver regeneration model

12 September 2017

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Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio)

12 September 2017

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Mercury-induced hepatotoxicity in zebrafish: in vivo mechanistic insights from transcriptome analysis, phenotype anchoring and targeted gene expression validation

12 September 2017

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MYC as a regulator of ribosome biogenesis and protein synthesis

12 September 2017

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A microarray analysis of sex- and gonad-biased gene expression in the zebrafish: evidence for masculinization of the transcriptome

12 September 2017

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Liver X receptor in cholesterol metabolism

12 September 2017

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12 September 2017

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Sex differences in the expression of hepatic drug metabolizing enzymes

12 September 2017

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Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling

12 September 2017

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High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer

12 September 2017

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Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools

12 September 2017

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Hepatic gene expression profiling using GeneChips in zebrafish exposed to 17alpha-methyldihydrotestosterone

12 September 2017

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Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain

12 September 2017

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Biomarkers for exposure to estrogenic compounds: gene expression analysis in zebrafish (Danio rerio).

12 September 2017

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Moderated statistical tests for assessing differences in tag abundance

12 September 2017

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Small-sample estimation of negative binomial dispersion, with applications to SAGE data

12 September 2017

1 reference

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Tissue-specific expression and regulation of sexually dimorphic genes in mice

12 September 2017

1 reference

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Sex and the liver - a journey through five decades

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

HNF factors form a network to regulate liver-enriched genes in zebrafish

12 September 2017

1 reference

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Transcriptional regulation of metabolism

12 September 2017

1 reference

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Modeling liver cancer using zebrafish: a comparative oncogenomics approach

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Gene expression patterns in rainbow trout, Oncorhynchus mykiss, exposed to a suite of model toxicants

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Coactivation of Foxa2 through Pgc-1beta promotes liver fatty acid oxidation and triglyceride/VLDL secretion

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Cytokines, STATs and liver disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Hepatic gene expression changes in mouse models with liver-specific deletion or global suppression of the NADPH-cytochrome P450 reductase gene. Mechanistic implications for the regulation of microsomal cytochrome P450 and the fatty liver phenotype

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

CYP2K6 from zebrafish (Danio rerio): cloning, mapping, developmental/tissue expression, and aflatoxin B1 activation by baculovirus expressed enzyme.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

The stress response and the regulation of inflammatory disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Inducible and repressable oncogene-addicted hepatocellular carcinoma in Tet-on xmrk transgenic zebrafish

12 September 2017

1 reference

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Genome-wide identification of female-enriched genes in zebrafish.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Sexual Dimorphism in the Liver

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Sex differences in transcriptional expression of FABPs in zebrafish liver after chronic perfluorononanoic acid exposure.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Activating transcription factor 6 plays protective and pathological roles in steatosis due to endoplasmic reticulum stress in zebrafish

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Conditional deletion of beta-catenin reveals its role in liver growth and regeneration

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Is vitellogenin an ancestor of apolipoprotein B-100 of human low-density lipoprotein and human lipoprotein lipase?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3547925

Sexually dimorphic gene expression in the brains of mature zebrafish.

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Gender-specific expression of multiple estrogen receptors, growth hormone receptors, insulin-like growth factors and vitellogenins, and effects of 17 beta-estradiol in the male tilapia (Oreochromis mossambicus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Comparative expression analysis in mature gonads, liver and brain of turbot (Scophthalmus maximus) by cDNA-AFLPS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Gender-specific proteomic responses in zebrafish liver following exposure to a selected mixture of brominated flame retardants

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Comparative embryotoxicity and proteotoxicity of three carrier solvents to zebrafish (Danio rerio) embryos

21 January 2018

1 reference

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Vitellogenin is a cidal factor capable of killing bacteria via interaction with lipopolysaccharide and lipoteichoic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Tandem-repeated Zebrafish zp3 genes possess oocyte-specific promoters and are insensitive to estrogen induction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Differential gene expression and biomarkers in zebrafish (Danio rerio) following exposure to produced water components.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

In vivo aflatoxin B1 metabolism and hepatic DNA adduction in zebrafish (Danio rerio).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Sexually dimorphic P450 gene expression in liver-specific hepatocyte nuclear factor 4alpha-deficient mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Gene expression analysis of estrogenic compounds in the liver of common carp (Cyprinus carpio) using a custom cDNA microarray.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Variation of the genetic expression pattern after exposure to estradiol-17beta and 4-nonylphenol in male zebrafish (Danio rerio).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Hepatic and extrahepatic expression of vitellogenin genes in the zebrafish, Danio rerio

21 January 2018

1 reference

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Molecular cloning of zebrafish and medaka vitellogenin genes and comparison of their expression in response to 17beta-estradiol

21 January 2018

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Progression of chronic hepatitis and preneoplasia in Helicobacter hepaticus-infected A/JCr mice

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Large-scale gene profiling of the liver in a mouse model of chronic, intragastric ethanol infusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Hepatocellular carcinoma associated with liver-gender disruption in male mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0053562

Chitinase effects on immune cell response in neuromyelitis optica and multiple sclerosis

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23349717

12 December 2020

inferred from PubMed ID database lookup

Comparative transcriptome analyses revealed conserved biological and transcription factor target modules between the zebrafish and human tumors

1 reference

https://pubmed.ncbi.nlm.nih.gov/23349717

12 December 2020

inferred from PubMed ID database lookup

Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

1 reference

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12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0053562

1 reference

release_4a73wxv3wnbqhdj7corpdcmdj4

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/4a73wxv3wnbqhdj7corpdcmdj4

24 November 2022

mapped directly with Wikidata item

2344888

1 reference

1 reference

2344888

1 reference