The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples (Q21562303)

ORCID Public Data File 2021

26 August 2022

11

Marvin

Frazier

Marvin Frazier

1 reference

26 August 2022

Cynthia Andrews-Pfannkoch

series ordinal

7

object named as

Cynthia Andrews-Pfannkoch

author given names

Cynthia

author last names

Andrews-Pfannkoch

1 reference

26 August 2022

8

Douglas Fadrosh

Douglas

Fadrosh

1 reference

26 August 2022

2

Douglas B Rusch

Douglas B

Rusch

1 reference

26 August 2022

Shannon J Williamson

1

Shannon J

Williamson

1 reference

26 August 2022

Aaron L Halpern

series ordinal

4

author given names

Aaron L

author last names

Halpern

1 reference

26 August 2022

Granger Sutton

series ordinal

10

author given names

Granger

author last names

Sutton

1 reference

26 August 2022

language of work or name

English

0 references

publication date

2008

0 references

published in

PLOS One

0 references

volume

3

0 references

issue

1

0 references

page(s)

e1456

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

23 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

The marine viromes of four oceanic regions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Giant viruses in the oceans: the 4th Algal Virus Workshop

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Transfer of photosynthesis genes to and from Prochlorococcus viruses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Genomic analysis of uncultured marine viral communities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Virioplankton: Viruses in Aquatic Ecosystems

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Prochlorococcus, a marine photosynthetic prokaryote of global significance

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

A modular domain of NifU, a nitrogen fixation cluster protein, is highly conserved in evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Environmental genome shotgun sequencing of the Sargasso Sea

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

The Pfam protein families database

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Viral photosynthetic reaction center genes and transcripts in the marine environment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Community structure and metabolism through reconstruction of microbial genomes from the environment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Community genomics among stratified microbial assemblages in the ocean's interior

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Autotrophic picoplankton in the tropical ocean

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Dynamics and Distribution of Cyanophages and Their Effect on Marine Synechococcus spp

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Photosynthesis genes in marine viruses yield proteins during host infection

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Coevolutionary arms races between bacteria and bacteriophage

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Crystal ball. The viriosphere: the greatest biological diversity on Earth and driver of global processes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Effect of nutrient addition and environmental factors on prophage induction in natural populations of marine synechococcus species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Are viruses driving microbial diversification and diversity?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Metagenomic analyses of an uncultured viral community from human feces

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Marine ecosystems: bacterial photosynthesis genes in a virus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Marine viruses and their biogeochemical and ecological effects

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Bacteriophage diversity in the North Sea.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Gene transfer by transduction in the marine environment.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

High abundance of viruses found in aquatic environments.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

The population biology of bacterial viruses: why be temperate

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Distribution of viruses in the Chesapeake Bay.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001456

Diversity and population structure of a near-shore marine-sediment viral community.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001456

Structure of virioplankton in the Charente Estuary (France): transmission electron microscopy versus pulsed field gel electrophoresis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001456

Viral mortality of marine bacteria and cyanobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001456

Lysogeny in marine Synechococcus

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2186209

Infection of Synechococcus cedrorum by the cyanophage AS-1M. II. Protein and DNA synthesis

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18213365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ClustalW-MPI: ClustalW analysis using distributed and parallel computing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18213365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18213365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0001456

1 reference

3273513

ADS bibcode

2008PLoSO...3.1456W

0 references

3273513

1 reference

1 reference

1 reference