The cobweb of life revealed by genome-scale estimates of horizontal gene transfer (Q21563627)

4 July 2017

The cobweb of life revealed by genome-scale estimates of horizontal gene transfer (English)

1 reference

4 July 2017

horizontal gene transfer

0 references

3

Junhyong Kim

Junhyong

Kim

1 reference

13 September 2022

Fan Ge

1

Fan

Ge

1 reference

PubMed ID

16122348

4 July 2017

Li-San Wang

series ordinal

2

author given names

Li-San

author last names

Wang

1 reference

PubMed ID

16122348

4 July 2017

language of work or name

English

0 references

publication date

30 August 2005

1 reference

4 July 2017

1 reference

4 July 2017

3

1 reference

4 July 2017

10

1 reference

4 July 2017

e316

1 reference

Creative Commons Attribution 4.0 International

4 July 2017

start time

30 August 2005

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox

19 March 2017

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

19 March 2017

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

19 March 2017

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On the evolution of cells

19 March 2017

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

19 March 2017

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Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

19 March 2017

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Horizontal gene transfer among genomes: the complexity hypothesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Molecular archaeology of the Escherichia coli genome

19 March 2017

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Lateral gene transfer and the nature of bacterial innovation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Phylogenetic classification and the universal tree

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Prokaryotic evolution in light of gene transfer

7 April 2017

1 reference

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Horizontal gene transfer in prokaryotes: quantification and classification

7 April 2017

1 reference

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Genome-wide molecular clock and horizontal gene transfer in bacterial evolution

7 April 2017

1 reference

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Phylogenetic reconstruction and lateral gene transfer.

12 September 2017

1 reference

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Biased biological functions of horizontally transferred genes in prokaryotic genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Speciation in Chlamydia: genomewide phylogenetic analyses identified a reliable set of acquired genes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Lateral gene transfer: when will adolescence end?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Horizontal gene transfer and phylogenetics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Quartet mapping and the extent of lateral transfer in bacterial genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Phylogenetics and the cohesion of bacterial genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Horizontal gene transfer: a critical view

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

The genetic core of the universal ancestor

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Direct measurement of the transfer rate of chloroplast DNA into the nucleus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Ancient horizontal gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Critical issues in bacterial phylogeny

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

How should species phylogenies be inferred from sequence data?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

On surrogate methods for detecting lateral gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Microbial genes in the human genome: lateral transfer or gene loss?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Horizontal gene transfer among microbial genomes: new insights from complete genome analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Horizontal gene transfer in bacterial and archaeal complete genomes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Defining the core of nontransferable prokaryotic genes: the euryarchaeal core

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Archaeal phylogeny based on ribosomal proteins

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.0030316

Successful Lateral Transfer Requires Codon Usage Compatibility Between Foreign Genes and Recipient Genomes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Widespread horizontal transfer of mitochondrial genes in flowering plants

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Whole-Genome Analysis of Photosynthetic Prokaryotes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

Gene transfer to the nucleus and the evolution of chloroplasts.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

A tree obscured by vines: horizontal gene transfer and the median tree method of estimating species phylogeny.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

The agreement metric for labeled binary trees.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1233574

A non-hyperthermophilic ancestor for Bacteria

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16122348

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16122348

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene Trees in Species Trees

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.0030316

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.0030316

1 reference

release_w2vbdc6uira2vbzr3xikrvtvoy

4 July 2017

0 references

OpenCitations bibliographic resource ID

4372071

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

4 July 2017

1 reference

PubMed ID

16122348